* installing *source* package ‘cvam’ ...
** package ‘cvam’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using Fortran compiler: ‘GNU Fortran (GCC) 12.2.0’
using SDK: ‘MacOSX11.3.sdk’
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c program_constants.f90 -o program_constants.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c error_handler.f90 -o error_handler.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c dynalloc.f90 -o dynalloc.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c quick_sort.f90 -o quick_sort.o
quick_sort.f90:466:3:
466 | function toupper( sstr1, ilen ) result(sstr2)
| ^
Warning: ‘toupper’ defined but not used [-Wunused-function]
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c tabulate.f90 -o tabulate.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c matrix_methods.f90 -o matrix_methods.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mathRC.c -o mathRC.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c mathRF77.f -o mathRF77.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c math_R.f90 -o math_R.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c math_funcs.f90 -o math_funcs.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c cvam_engine.f90 -o cvam_engine.o
cvam_engine.f90:12060:3:
12060 | 800 call err_handle(err, 2, whichsub = subname, whichmod = modname )
| 1
Warning: Label 800 at (1) defined but not used [-Wunused-label]
cvam_engine.f90:10691:3:
10691 | 800 call err_handle(err, 2, whichsub = subname, whichmod = modname )
| 1
Warning: Label 800 at (1) defined but not used [-Wunused-label]
cvam_engine.f90:5401:22:
5401 | cest = work%estimates(i)%cell
| 1
Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion]
cvam_engine.f90:5415:22:
5415 | cest = work%estimates(i)%cell
| 1
Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion]
cvam_engine.f90:5625:25:
5625 | var_old = work%var(jj)
| 1
Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion]
cvam_engine.f90:5682:25:
5682 | var_old = work%var(jj)
| 1
Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion]
cvam_engine.f90:6821:22:
6821 | cest = work%estimates(i)%cell
| 1
Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion]
cvam_engine.f90:6835:22:
6835 | cest = work%estimates(i)%cell
| 1
Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion]
cvam_engine.f90:3570:18:
3570 | work%cell = 1 + work%cell_fixed_part + work%cell_random_part
| 1
Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion]
cvam_engine.f90:3628:18:
3628 | work%cell = 1 + work%cell_fixed_part + work%cell_random_part
| 1
Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion]
cvam_engine.f90:5535:22:
5535 | cest = work%estimates(i)%cell
| 1
Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion]
cvam_engine.f90:5550:22:
5550 | cest = work%estimates(i)%cell
| 1
Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion]
cvam_engine.f90:12084:65:
12084 | integer(kind=our_int) :: cov_patt, posn, y, i, j, k, l, ii
| 1
Warning: Unused variable ‘ii’ declared at (1) [-Wunused-variable]
cvam_engine.f90:12006:14:
12006 | work, logit, mvcode, nancode, infcode, neginfcode, err ) &
| 1
Warning: Unused dummy argument ‘work’ at (1) [-Wunused-dummy-argument]
cvam_engine.f90:11644:61:
11644 | integer(kind=our_int) function get_pimat_big_logit( work, logit, &
| 1
Warning: Unused dummy argument ‘work’ at (1) [-Wunused-dummy-argument]
cvam_engine.f90:12967:52:
12967 | integer(kind=our_int) function get_lcmeas_params( lcmeas, params, &
| ^
Warning: ‘get_lcmeas_params’ defined but not used [-Wunused-function]
cvam_engine.f90:13012:55:
13012 | integer(kind=our_int) function update_lcmeas_params( lcmeas, &
| ^
Warning: ‘update_lcmeas_params’ defined but not used [-Wunused-function]
cvam_engine.f90:11806:64:
11806 | logit%max_diff_em = max( logit%max_diff_em, max_diff )
| ^
Warning: ‘max_diff’ may be used uninitialized [-Wmaybe-uninitialized]
cvam_engine.f90:11714:49:
11714 | real(kind=our_dble) :: sum, rtmp, max_diff
| ^
note: ‘max_diff’ was declared here
cvam_engine.f90:10948:22:
10948 | if( .not. failed ) call err_handle(err, 1, &
| ^
Warning: ‘failed’ may be used uninitialized [-Wmaybe-uninitialized]
cvam_engine.f90:10812:45:
10812 | logical :: aborted, aborted_nr, failed, boundary
| ^
note: ‘failed’ was declared here
cvam_engine.f90:11480:52:
11480 | work%pred(i, logit%xcol(j))
| ^
Warning: ‘i’ may be used uninitialized [-Wmaybe-uninitialized]
cvam_engine.f90:11409:26:
11409 | l, m, posnA, i, mvcode, ycol, size_mapset, ystar, jj
| ^
note: ‘i’ was declared here
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c cvam.f90 -o cvam.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c cvam_init.c -o cvam_init.o
clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o cvam.so cvam.o cvam_engine.o cvam_init.o dynalloc.o error_handler.o mathRC.o mathRF77.o math_R.o math_funcs.o matrix_methods.o program_constants.o quick_sort.o tabulate.o -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: object file (cvam.o) was built for newer macOS version (13.0) than being linked (11.3)
ld: warning: object file (error_handler.o) was built for newer macOS version (13.0) than being linked (11.3)
ld: warning: object file (dynalloc.o) was built for newer macOS version (13.0) than being linked (11.3)
ld: warning: object file (mathRF77.o) was built for newer macOS version (13.0) than being linked (11.3)
ld: warning: object file (math_R.o) was built for newer macOS version (13.0) than being linked (11.3)
ld: warning: object file (math_funcs.o) was built for newer macOS version (13.0) than being linked (11.3)
ld: warning: could not create compact unwind for _fit_cvam_model_: stack subq instruction is too different from dwarf stack size
ld: warning: object file (program_constants.o) was built for newer macOS version (13.0) than being linked (11.3)
ld: warning: could not create compact unwind for _cvam_estimate_em_: stack subq instruction is too different from dwarf stack size
ld: warning: object file (cvam_engine.o) was built for newer macOS version (13.0) than being linked (11.3)
ld: warning: could not create compact unwind for _cvam_predict_em_: stack subq instruction is too different from dwarf stack size
ld: warning: object file (quick_sort.o) was built for newer macOS version (13.0) than being linked (11.3)
ld: warning: could not create compact unwind for _cvam_impute_freq_: stack subq instruction is too different from dwarf stack size
ld: warning: object file (tabulate.o) was built for newer macOS version (13.0) than being linked (11.3)
ld: warning: object file (matrix_methods.o) was built for newer macOS version (13.0) than being linked (11.3)
ld: warning: could not create compact unwind for ___cvam_engine_MOD_create_estimate_objects.constprop.0: stack subq instruction is too different from dwarf stack size
ld: warning: could not create compact unwind for ___cvam_engine_MOD_setup_lcmeas_workspace.constprop.0: stack subq instruction is too different from dwarf stack size
ld: warning: could not create compact unwind for _cvam_impute_microdata_: stack subq instruction is too different from dwarf stack size
ld: warning: could not create compact unwind for _cvam_lik_: stack subq instruction is too different from dwarf stack size
ld: warning: could not create compact unwind for _cvam_logit_: stack subq instruction is too different from dwarf stack size
ld: warning: could not create compact unwind for _cvam_logit_predict_: stack subq instruction is too different from dwarf stack size
ld: warning: could not create compact unwind for _cvam_lcmeas_: stack subq instruction is too different from dwarf stack size
ld: warning: could not create compact unwind for ___cvam_engine_MOD_run_cvam_lik: stack subq instruction is too different from dwarf stack size
ld: warning: could not create compact unwind for ___cvam_engine_MOD_run_cvam_model: stack subq instruction is too different from dwarf stack size
rm -f *.mod *.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c program_constants.f90 -o program_constants.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c error_handler.f90 -o error_handler.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c dynalloc.f90 -o dynalloc.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c quick_sort.f90 -o quick_sort.o
quick_sort.f90:466:3:
466 | function toupper( sstr1, ilen ) result(sstr2)
| ^
Warning: ‘toupper’ defined but not used [-Wunused-function]
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c tabulate.f90 -o tabulate.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c matrix_methods.f90 -o matrix_methods.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mathRC.c -o mathRC.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c mathRF77.f -o mathRF77.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c math_R.f90 -o math_R.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c math_funcs.f90 -o math_funcs.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c cvam_engine.f90 -o cvam_engine.o
cvam_engine.f90:12060:3:
12060 | 800 call err_handle(err, 2, whichsub = subname, whichmod = modname )
| 1
Warning: Label 800 at (1) defined but not used [-Wunused-label]
cvam_engine.f90:10691:3:
10691 | 800 call err_handle(err, 2, whichsub = subname, whichmod = modname )
| 1
Warning: Label 800 at (1) defined but not used [-Wunused-label]
cvam_engine.f90:5401:22:
5401 | cest = work%estimates(i)%cell
| 1
Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion]
cvam_engine.f90:5415:22:
5415 | cest = work%estimates(i)%cell
| 1
Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion]
cvam_engine.f90:5625:25:
5625 | var_old = work%var(jj)
| 1
Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion]
cvam_engine.f90:5682:25:
5682 | var_old = work%var(jj)
| 1
Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion]
cvam_engine.f90:6821:22:
6821 | cest = work%estimates(i)%cell
| 1
Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion]
cvam_engine.f90:6835:22:
6835 | cest = work%estimates(i)%cell
| 1
Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion]
cvam_engine.f90:3570:18:
3570 | work%cell = 1 + work%cell_fixed_part + work%cell_random_part
| 1
Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion]
cvam_engine.f90:3628:18:
3628 | work%cell = 1 + work%cell_fixed_part + work%cell_random_part
| 1
Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion]
cvam_engine.f90:5535:22:
5535 | cest = work%estimates(i)%cell
| 1
Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion]
cvam_engine.f90:5550:22:
5550 | cest = work%estimates(i)%cell
| 1
Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion]
cvam_engine.f90:12084:65:
12084 | integer(kind=our_int) :: cov_patt, posn, y, i, j, k, l, ii
| 1
Warning: Unused variable ‘ii’ declared at (1) [-Wunused-variable]
cvam_engine.f90:12006:14:
12006 | work, logit, mvcode, nancode, infcode, neginfcode, err ) &
| 1
Warning: Unused dummy argument ‘work’ at (1) [-Wunused-dummy-argument]
cvam_engine.f90:11644:61:
11644 | integer(kind=our_int) function get_pimat_big_logit( work, logit, &
| 1
Warning: Unused dummy argument ‘work’ at (1) [-Wunused-dummy-argument]
cvam_engine.f90:12967:52:
12967 | integer(kind=our_int) function get_lcmeas_params( lcmeas, params, &
| ^
Warning: ‘get_lcmeas_params’ defined but not used [-Wunused-function]
cvam_engine.f90:13012:55:
13012 | integer(kind=our_int) function update_lcmeas_params( lcmeas, &
| ^
Warning: ‘update_lcmeas_params’ defined but not used [-Wunused-function]
cvam_engine.f90:11806:64:
11806 | logit%max_diff_em = max( logit%max_diff_em, max_diff )
| ^
Warning: ‘max_diff’ may be used uninitialized [-Wmaybe-uninitialized]
cvam_engine.f90:11714:49:
11714 | real(kind=our_dble) :: sum, rtmp, max_diff
| ^
note: ‘max_diff’ was declared here
cvam_engine.f90:10948:22:
10948 | if( .not. failed ) call err_handle(err, 1, &
| ^
Warning: ‘failed’ may be used uninitialized [-Wmaybe-uninitialized]
cvam_engine.f90:10812:45:
10812 | logical :: aborted, aborted_nr, failed, boundary
| ^
note: ‘failed’ was declared here
cvam_engine.f90:11480:52:
11480 | work%pred(i, logit%xcol(j))
| ^
Warning: ‘i’ may be used uninitialized [-Wmaybe-uninitialized]
cvam_engine.f90:11409:26:
11409 | l, m, posnA, i, mvcode, ycol, size_mapset, ystar, jj
| ^
note: ‘i’ was declared here
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c cvam.f90 -o cvam.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c cvam_init.c -o cvam_init.o
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00LOCK-cvam/00new/cvam/libs
** generating debug symbols (dSYM)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/cvam.o: timestamp mismatch between object file (2023-04-08 16:05:34.965952523) and debug map (2023-04-08 16:04:54.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/cvam_engine.o: timestamp mismatch between object file (2023-04-08 16:05:30.003864093) and debug map (2023-04-08 16:04:49.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/cvam_init.o: timestamp mismatch between object file (2023-04-08 16:05:35.055781520) and debug map (2023-04-08 16:04:54.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/dynalloc.o: timestamp mismatch between object file (2023-04-08 16:04:56.417131206) and debug map (2023-04-08 16:04:09.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/error_handler.o: timestamp mismatch between object file (2023-04-08 16:04:55.853279830) and debug map (2023-04-08 16:04:09.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/mathRC.o: timestamp mismatch between object file (2023-04-08 16:04:59.197527083) and debug map (2023-04-08 16:04:13.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/mathRF77.o: timestamp mismatch between object file (2023-04-08 16:04:59.415249406) and debug map (2023-04-08 16:04:13.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/math_R.o: timestamp mismatch between object file (2023-04-08 16:04:59.997199528) and debug map (2023-04-08 16:04:14.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/math_funcs.o: timestamp mismatch between object file (2023-04-08 16:05:00.207784518) and debug map (2023-04-08 16:04:14.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/matrix_methods.o: timestamp mismatch between object file (2023-04-08 16:04:59.053148058) and debug map (2023-04-08 16:04:13.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/program_constants.o: timestamp mismatch between object file (2023-04-08 16:04:55.193354860) and debug map (2023-04-08 16:04:08.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/quick_sort.o: timestamp mismatch between object file (2023-04-08 16:04:56.876661955) and debug map (2023-04-08 16:04:10.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/tabulate.o: timestamp mismatch between object file (2023-04-08 16:04:57.421958463) and debug map (2023-04-08 16:04:11.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/cvam.o: timestamp mismatch between object file (2023-04-08 16:05:34.965952523) and debug map (2023-04-08 16:04:54.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/cvam_engine.o: timestamp mismatch between object file (2023-04-08 16:05:30.003864093) and debug map (2023-04-08 16:04:49.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/cvam_init.o: timestamp mismatch between object file (2023-04-08 16:05:35.055781520) and debug map (2023-04-08 16:04:54.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/dynalloc.o: timestamp mismatch between object file (2023-04-08 16:04:56.417131206) and debug map (2023-04-08 16:04:09.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/error_handler.o: timestamp mismatch between object file (2023-04-08 16:04:55.853279830) and debug map (2023-04-08 16:04:09.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/mathRC.o: timestamp mismatch between object file (2023-04-08 16:04:59.197527083) and debug map (2023-04-08 16:04:13.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/mathRF77.o: timestamp mismatch between object file (2023-04-08 16:04:59.415249406) and debug map (2023-04-08 16:04:13.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/math_R.o: timestamp mismatch between object file (2023-04-08 16:04:59.997199528) and debug map (2023-04-08 16:04:14.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/math_funcs.o: timestamp mismatch between object file (2023-04-08 16:05:00.207784518) and debug map (2023-04-08 16:04:14.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/matrix_methods.o: timestamp mismatch between object file (2023-04-08 16:04:59.053148058) and debug map (2023-04-08 16:04:13.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/program_constants.o: timestamp mismatch between object file (2023-04-08 16:04:55.193354860) and debug map (2023-04-08 16:04:08.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/quick_sort.o: timestamp mismatch between object file (2023-04-08 16:04:56.876661955) and debug map (2023-04-08 16:04:10.000000000)
warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/tabulate.o: timestamp mismatch between object file (2023-04-08 16:04:57.421958463) and debug map (2023-04-08 16:04:11.000000000)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cvam)