• using R version 4.4.1 (2024-06-14)
  • using platform: x86_64-apple-darwin20
  • R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 12.2.0
  • running under: macOS Ventura 13.3.1
  • using session charset: UTF-8
  • checking for file ‘coxme/DESCRIPTION’ ... OK
  • this is package ‘coxme’ version ‘2.2-22’
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking for hidden files and directories ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking whether package ‘coxme’ can be installed ... [12s/21s] OK See the install log for details.
  • used C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
  • used SDK: ‘MacOSX11.3.sdk’
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking ‘build’ directory ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking for left-over files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking code files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... [1s/3s] OK
  • checking whether the package can be loaded with stated dependencies ... [1s/3s] OK
  • checking whether the package can be unloaded cleanly ... [1s/4s] OK
  • checking whether the namespace can be loaded with stated dependencies ... [1s/4s] OK
  • checking whether the namespace can be unloaded cleanly ... [1s/4s] OK
  • checking loading without being on the library search path ... [1s/4s] OK
  • checking dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... [9s/22s] OK
  • checking Rd files ... [0s/1s] OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of ‘data’ directory ... OK
  • checking data for non-ASCII characters ... [0s/0s] OK
  • checking LazyData ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking line endings in C/C++/Fortran sources/headers ... OK
  • checking line endings in Makefiles ... OK
  • checking for GNU extensions in Makefiles ... OK
  • checking include directives in Makefiles ... OK
  • checking compiled code ... OK
  • checking sizes of PDF files under ‘inst/doc’ ... OK
  • checking installed files from ‘inst/doc’ ... OK
  • checking files in ‘vignettes’ ... OK
  • checking examples ... [3s/6s] OK
  • checking for unstated dependencies in ‘tests’ ... OK
  • checking tests ... [50s/101s] OK   Running ‘brfit.R’ [3s/5s]   Running ‘lmekin1.R’ [3s/5s]   Comparing ‘lmekin1.Rout’ to ‘lmekin1.Rout.save’ ... OK   Running ‘lmekin2.R’ [2s/3s]   Comparing ‘lmekin2.Rout’ to ‘lmekin2.Rout.save’ ... OK   Running ‘nest1.R’ [2s/3s]   Comparing ‘nest1.Rout’ to ‘nest1.Rout.save’ ... OK   Running ‘nest2.R’ [2s/3s]   Comparing ‘nest2.Rout’ to ‘nest2.Rout.save’ ... OK   Running ‘refine.R’ [2s/4s]   Comparing ‘refine.Rout’ to ‘refine.Rout.save’ ... OK   Running ‘refine1.R’ [2s/4s]   Comparing ‘refine1.Rout’ to ‘refine1.Rout.save’ ... OK   Running ‘refine2.R’ [2s/4s]   Comparing ‘refine2.Rout’ to ‘refine2.Rout.save’ ... OK   Running ‘refine3.R’ [2s/4s]   Comparing ‘refine3.Rout’ to ‘refine3.Rout.save’ ... OK   Running ‘shrink.R’ [2s/3s]   Comparing ‘shrink.Rout’ to ‘shrink.Rout.save’ ... OK   Running ‘slope1.R’ [7s/16s]   Comparing ‘slope1.Rout’ to ‘slope1.Rout.save’ ... OK   Running ‘slope2.R’ [3s/6s]   Comparing ‘slope2.Rout’ to ‘slope2.Rout.save’ ... OK   Running ‘slope3.R’ [3s/6s]   Comparing ‘slope3.Rout’ to ‘slope3.Rout.save’ ... OK   Running ‘slope4.R’ [5s/11s]   Comparing ‘slope4.Rout’ to ‘slope4.Rout.save’ ... OK   Running ‘strata1.R’ [2s/3s]   Comparing ‘strata1.Rout’ to ‘strata1.Rout.save’ ... OK   Running ‘test0.R’ [2s/3s]   Comparing ‘test0.Rout’ to ‘test0.Rout.save’ ... OK   Running ‘test1.R’ [2s/3s]   Comparing ‘test1.Rout’ to ‘test1.Rout.save’ ... OK   Running ‘test2.R’ [2s/4s]   Comparing ‘test2.Rout’ to ‘test2.Rout.save’ ... OK   Running ‘test3.R’ [2s/3s]   Comparing ‘test3.Rout’ to ‘test3.Rout.save’ ... OK   Running ‘test4.R’ [2s/4s]   Comparing ‘test4.Rout’ to ‘test4.Rout.save’ ... OK   Running ‘twoterm.R’ [2s/4s]   Comparing ‘twoterm.Rout’ to ‘twoterm.Rout.save’ ... OK
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes ... OK
  • checking re-building of vignette outputs ... [45s/94s] OK
  • checking PDF version of manual ... [8s/15s] OK
  • DONE Status: OK
  • using check arguments '--no-clean-on-error '