• using R version 4.0.2 (2020-06-22)
• using platform: x86_64-apple-darwin17.0 (64-bit)
• using session charset: UTF-8
• checking for file ‘coxme/DESCRIPTION’ ... OK
• this is package ‘coxme’ version ‘2.2-16’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘coxme’ can be installed ... [11s/14s] OK
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [8s/11s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in shell scripts ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for GNU extensions in Makefiles ... OK
• checking include directives in Makefiles ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [3s/4s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [58s/79s] OK
    Running ‘bdstest.R’ [2s/2s]
    Comparing ‘bdstest.Rout’ to ‘bdstest.Rout.save’ ... OK
    Running ‘brfit.R’ [4s/5s]
    Running ‘lmekin1.R’ [5s/7s]
    Comparing ‘lmekin1.Rout’ to ‘lmekin1.Rout.save’ ... OK
    Running ‘lmekin2.R’ [2s/3s]
    Comparing ‘lmekin2.Rout’ to ‘lmekin2.Rout.save’ ... OK
    Running ‘nest1.R’ [2s/2s]
    Comparing ‘nest1.Rout’ to ‘nest1.Rout.save’ ... OK
    Running ‘nest2.R’ [2s/2s]
    Comparing ‘nest2.Rout’ to ‘nest2.Rout.save’ ... OK
    Running ‘refine.R’ [2s/3s]
    Comparing ‘refine.Rout’ to ‘refine.Rout.save’ ... OK
    Running ‘refine1.R’ [2s/3s]
    Comparing ‘refine1.Rout’ to ‘refine1.Rout.save’ ... OK
    Running ‘refine2.R’ [2s/3s]
    Comparing ‘refine2.Rout’ to ‘refine2.Rout.save’ ... OK
    Running ‘refine3.R’ [2s/3s]
    Comparing ‘refine3.Rout’ to ‘refine3.Rout.save’ ... OK
    Running ‘shrink.R’ [2s/3s]
    Comparing ‘shrink.Rout’ to ‘shrink.Rout.save’ ... OK
    Running ‘slope1.R’ [7s/9s]
    Comparing ‘slope1.Rout’ to ‘slope1.Rout.save’ ... OK
    Running ‘slope2.R’ [3s/4s]
    Comparing ‘slope2.Rout’ to ‘slope2.Rout.save’ ... OK
    Running ‘slope3.R’ [3s/4s]
    Comparing ‘slope3.Rout’ to ‘slope3.Rout.save’ ... OK
    Running ‘slope4.R’ [5s/7s]
    Comparing ‘slope4.Rout’ to ‘slope4.Rout.save’ ... OK
    Running ‘strata1.R’ [2s/3s]
    Comparing ‘strata1.Rout’ to ‘strata1.Rout.save’ ... OK
    Running ‘test0.R’ [2s/3s]
    Comparing ‘test0.Rout’ to ‘test0.Rout.save’ ... OK
    Running ‘test1.R’ [2s/3s]
    Comparing ‘test1.Rout’ to ‘test1.Rout.save’ ... OK
    Running ‘test2.R’ [2s/3s]
    Comparing ‘test2.Rout’ to ‘test2.Rout.save’ ... OK
    Running ‘test3.R’ [2s/3s]
    Comparing ‘test3.Rout’ to ‘test3.Rout.save’ ... OK
    Running ‘test4.R’ [2s/2s]
    Comparing ‘test4.Rout’ to ‘test4.Rout.save’ ... OK
    Running ‘twoterm.R’ [2s/3s]
    Comparing ‘twoterm.Rout’ to ‘twoterm.Rout.save’ ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [59s/84s] OK
    ‘coxme.Rnw’... [9s/13s] OK
    ‘laplace.Rnw’... [9s/12s] OK
    ‘lmekin.Rnw’... [40s/56s] OK
    ‘variance.Rnw’... [2s/3s] OK
• checking re-building of vignette outputs ... [75s/106s] OK
• checking PDF version of manual ... OK
• DONE
  Status: OK