• using R version 4.4.0 (2024-04-24)
• using platform: x86_64-apple-darwin20
• R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 12.2.0
• running under: macOS Ventura 13.3.1
• using session charset: UTF-8
• checking for file ‘benthos/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘benthos’ version ‘1.3-8’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘benthos’ can be installed ... [4s/5s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [3s/4s] OK
• checking Rd files ... [0s/1s] NOTE checkRd: (-1) hill.Rd:39: Lost braces; missing escapes or markup?     39 | \code{a} in {0, 1, 2} (see details))}        | ^ checkRd: (-1) read_ambi.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) read_ambi.Rd:23-24: Lost braces in \itemize; meant \describe ? checkRd: (-1) read_iti.Rd:39: Lost braces in \itemize; meant \describe ? checkRd: (-1) read_iti.Rd:40: Lost braces in \itemize; meant \describe ? checkRd: (-1) read_iti.Rd:41: Lost braces in \itemize; meant \describe ? checkRd: (-1) read_iti.Rd:42: Lost braces in \itemize; meant \describe ? checkRd: (-1) read_taxa.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) read_taxa.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) read_taxa.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) read_taxa.Rd:29: Lost braces in \itemize; meant \describe ? checkRd: (-1) read_twn.Rd:36: Lost braces in \itemize; meant \describe ? checkRd: (-1) read_twn.Rd:37: Lost braces in \itemize; meant \describe ? checkRd: (-1) read_twn.Rd:38: Lost braces in \itemize; meant \describe ? checkRd: (-1) read_twn.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) read_twn.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) read_twn.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) read_twn.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/3s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [3s/4s] OK   Running ‘test-all.R’ [2s/4s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [23s/29s] OK
• checking PDF version of manual ... [8s/14s] OK
• DONE Status: 1 NOTE
• using check arguments '--no-clean-on-error '