* installing *source* package ‘adapt3’ ... ** package ‘adapt3’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/lefko3/include' -I/opt/R/x86_64/include -I../inst/include/ -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/lefko3/include' -I/opt/R/x86_64/include -I../inst/include/ -fPIC -falign-functions=64 -Wall -g -O2 -c projection.cpp -o projection.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/lefko3/include' -I/opt/R/x86_64/include -I../inst/include/ -fPIC -falign-functions=64 -Wall -g -O2 -c utilities.cpp -o utilities.o projection.cpp:5571:8: warning: variable 'pure_fleslie' set but not used [-Wunused-but-set-variable] bool pure_fleslie {false}; // Are all function-based MPMs Leslie MPMs? ^ projection.cpp:5576:7: warning: variable 'stageframe_count' set but not used [-Wunused-but-set-variable] int stageframe_count {0}; ^ projection.cpp:5577:7: warning: variable 'stageframe_notNull_count' set but not used [-Wunused-but-set-variable] int stageframe_notNull_count {0}; ^ projection.cpp:5578:7: warning: variable 'supplement_count' set but not used [-Wunused-but-set-variable] int supplement_count {0}; ^ projection.cpp:5579:7: warning: variable 'equivalence_count' set but not used [-Wunused-but-set-variable] int equivalence_count {0}; ^ projection.cpp:5580:7: warning: variable 'start_count' set but not used [-Wunused-but-set-variable] int start_count {0}; ^ projection.cpp:5581:7: warning: variable 'tweights_count' set but not used [-Wunused-but-set-variable] int tweights_count {0}; ^ projection.cpp:5582:7: warning: variable 'density_count' set but not used [-Wunused-but-set-variable] int density_count {0}; ^ projection.cpp:5583:7: warning: variable 'entry_time_count' set but not used [-Wunused-but-set-variable] int entry_time_count {0}; ^ projection.cpp:5584:7: warning: variable 'density_vr_count' set but not used [-Wunused-but-set-variable] int density_vr_count {0}; ^ projection.cpp:5585:7: warning: variable 'sparse_vec_count' set but not used [-Wunused-but-set-variable] int sparse_vec_count {0}; ^ projection.cpp:5586:7: warning: variable 'found_fleslie' set but not used [-Wunused-but-set-variable] int found_fleslie {0}; ^ projection.cpp:16582:7: warning: unused variable 'stageframe_count' [-Wunused-variable] int stageframe_count {0}; ^ projection.cpp:16583:7: warning: variable 'stageframe_notNull_count' set but not used [-Wunused-but-set-variable] int stageframe_notNull_count {0}; ^ projection.cpp:16584:7: warning: unused variable 'supplement_count' [-Wunused-variable] int supplement_count {0}; ^ projection.cpp:16585:7: warning: variable 'equivalence_count' set but not used [-Wunused-but-set-variable] int equivalence_count {0}; ^ projection.cpp:16586:7: warning: variable 'start_count' set but not used [-Wunused-but-set-variable] int start_count {0}; ^ projection.cpp:16587:7: warning: variable 'tweights_count' set but not used [-Wunused-but-set-variable] int tweights_count {0}; ^ projection.cpp:16588:7: warning: variable 'density_count' set but not used [-Wunused-but-set-variable] int density_count {0}; ^ projection.cpp:16590:7: warning: variable 'entry_time_count' set but not used [-Wunused-but-set-variable] int entry_time_count {0}; ^ projection.cpp:16591:7: warning: variable 'density_vr_count' set but not used [-Wunused-but-set-variable] int density_vr_count {0}; ^ projection.cpp:16592:7: warning: variable 'sparse_vec_count' set but not used [-Wunused-but-set-variable] int sparse_vec_count {0}; ^ projection.cpp:16604:8: warning: variable 'prebreeding_bool' set but not used [-Wunused-but-set-variable] bool prebreeding_bool {true}; ^ 23 warnings generated. clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o adapt3.so RcppExports.o projection.o utilities.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.4/adapt3.Rcheck/00LOCK-adapt3/00new/adapt3/libs ** generating debug symbols (dSYM) ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (adapt3)