• using R version 3.6.2 (2019-12-12)
  • using platform: x86_64-apple-darwin15.6.0 (64-bit)
  • using session charset: UTF-8
  • checking for file ‘TreeLS/DESCRIPTION’ ... OK
  • checking extension type ... Package
  • this is package ‘TreeLS’ version ‘2.0.2’
  • package encoding: UTF-8
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking for hidden files and directories ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking whether package ‘TreeLS’ can be installed ... [113s/115s] WARNING
    Found the following significant warnings:
      Warning: 'rgl.init' failed, running with 'rgl.useNULL = TRUE'.
    See https://www.r-project.org/nosvn/R.check/r-oldrel-macos-x86_64/TreeLS-00install.html for details.
  • checking installed package size ... NOTE
      installed size is 16.3Mb
      sub-directories of 1Mb or more:
        extdata 1.2Mb
        libs 14.5Mb
  • checking package directory ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking for left-over files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking loading without being on the library search path ... OK
  • checking dependencies in R code ... NOTE
    Namespace in Imports field not imported from: ‘mathjaxr’
      All declared Imports should be used.
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... [16s/16s] OK
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking line endings in C/C++/Fortran sources/headers ... OK
  • checking line endings in Makefiles ... OK
  • checking compilation flags in Makevars ... OK
  • checking for GNU extensions in Makefiles ... OK
  • checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
  • checking compiled code ... OK
  • checking examples ... ERROR
    Running examples in ‘TreeLS-Ex.R’ failed
    The error most likely occurred in:

    > ### Name: nnFilter
    > ### Title: Nearest neighborhood point filter
    > ### Aliases: nnFilter
    >
    > ### ** Examples
    >
    > file = system.file("extdata", "spruce.laz", package="TreeLS")
    > tls = readTLS(file)
    > nrow(tls@data)
    [1] 83392
    >
    > nn_tls = nnFilter(tls, 0.05, 3)
    sh: sysctl: command not found
      Unable to detect your RAM. # nocov
                Please raise an issue at https://github.com/csgillespie/benchmarkme
    Error in if (can_malloc < 0) { : missing value where TRUE/FALSE needed
    Calls: nnFilter -> sizeCheck
    Execution halted
  • checking PDF version of manual ... OK
  • DONE
    Status: 1 ERROR, 1 WARNING, 2 NOTEs