- using R version 3.6.2 (2019-12-12)
- using platform: x86_64-apple-darwin15.6.0 (64-bit)
- using session charset: UTF-8
- checking for file ‘TreeLS/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘TreeLS’ version ‘2.0.2’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘TreeLS’ can be installed ... [113s/115s] WARNING
Found the following significant warnings:
Warning: 'rgl.init' failed, running with 'rgl.useNULL = TRUE'.
See https://www.r-project.org/nosvn/R.check/r-oldrel-macos-x86_64/TreeLS-00install.html for details.
- checking installed package size ... NOTE
installed size is 16.3Mb
sub-directories of 1Mb or more:
extdata 1.2Mb
libs 14.5Mb
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘mathjaxr’
All declared Imports should be used.
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [16s/16s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking compiled code ... OK
- checking examples ... ERROR
Running examples in ‘TreeLS-Ex.R’ failed
The error most likely occurred in:
> ### Name: nnFilter
> ### Title: Nearest neighborhood point filter
> ### Aliases: nnFilter
>
> ### ** Examples
>
> file = system.file("extdata", "spruce.laz", package="TreeLS")
> tls = readTLS(file)
> nrow(tls@data)
[1] 83392
>
> nn_tls = nnFilter(tls, 0.05, 3)
sh: sysctl: command not found
Unable to detect your RAM. # nocov
Please raise an issue at https://github.com/csgillespie/benchmarkme
Error in if (can_malloc < 0) { : missing value where TRUE/FALSE needed
Calls: nnFilter -> sizeCheck
Execution halted
- checking PDF version of manual ... OK
- DONE
Status: 1 ERROR, 1 WARNING, 2 NOTEs