* installing *source* package ‘TDA’ ...
** package ‘TDA’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
expr: syntax error
clang++ -mmacosx-version-min=10.13 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include' -I/usr/local/include  -DBOOST_DISABLE_THREADS -DCGAL_EIGEN3_ENABLED -DCGAL_HEADER_ONLY -DCGAL_DO_NOT_USE_BOOST_MP -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigenForward.h:30:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Dense:1:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Core:540:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigenForward.h:30:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Dense:2:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/LU:47:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigenForward.h:30:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Dense:3:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Cholesky:12:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Jacobi:29:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigenForward.h:30:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Dense:3:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Cholesky:43:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigenForward.h:30:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Dense:4:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/QR:15:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Householder:27:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigenForward.h:30:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Dense:4:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/QR:48:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigenForward.h:30:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Dense:5:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/SVD:48:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigenForward.h:30:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Dense:6:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Geometry:58:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigenForward.h:30:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Dense:7:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Eigenvalues:58:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/SparseCore:66:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Sparse:27:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/OrderingMethods:71:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/SparseCholesky:43:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Sparse:32:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/SparseQR:34:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Sparse:33:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigenForward.h:32:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/CholmodSupport:45:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigenForward.h:35:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigenForward.h:39:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/RcppEigenForward.h:40:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
18 warnings generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include' -I/usr/local/include  -DBOOST_DISABLE_THREADS -DCGAL_EIGEN3_ENABLED -DCGAL_HEADER_ONLY -DCGAL_DO_NOT_USE_BOOST_MP -fPIC  -Wall -g -O2  -c diag.cpp -o diag.o
In file included from diag.cpp:9:
In file included from ./tdautils/ripsL2.h:5:
In file included from ./topology/rips.h:6:
In file included from ./topology/simplex.h:221:
./topology/simplex.hpp:12:1: warning: 'BoundaryIterator' defined as a struct here but previously declared as a class [-Wmismatched-tags]
struct Simplex<V,T>::BoundaryIterator: public boost::iterator_adaptor<BoundaryIterator,                                 // Derived
^
./topology/simplex.h:47:9: note: did you mean struct here?
        class BoundaryIterator;
        ^~~~~
        struct
In file included from diag.cpp:9:
In file included from ./tdautils/ripsL2.h:5:
./topology/rips.h:173:1: warning: 'ComparePair' defined as a struct here but previously declared as a class [-Wmismatched-tags]
struct Rips<Distances_, Simplex_>::ComparePair
^
./topology/rips.h:35:9: note: did you mean struct here?
        class               ComparePair;       
        ^~~~~
        struct
In file included from diag.cpp:9:
In file included from ./tdautils/ripsL2.h:7:
In file included from ./topology/static-persistence.h:17:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include/boost/progress.hpp:23:1: warning: This header is deprecated. Use the facilities in <boost/timer/timer.hpp> or <boost/timer/progress_display.hpp> instead. [-W#pragma-messages]
BOOST_HEADER_DEPRECATED( "the facilities in <boost/timer/timer.hpp> or <boost/timer/progress_display.hpp>" )
^
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED'
# define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.")
                                    ^
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE'
# define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x)))
                                 ^
<scratch space>:7:2: note: expanded from here
 message("This header is deprecated. Use " "the facilities in <boost/timer/timer.hpp> or <boost/timer/progress_display.hpp>" " instead.")
 ^
In file included from diag.cpp:9:
In file included from ./tdautils/ripsL2.h:7:
In file included from ./topology/static-persistence.h:17:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include/boost/progress.hpp:25:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include/boost/timer.hpp:21:1: warning: This header is deprecated. Use the facilities in <boost/timer/timer.hpp> instead. [-W#pragma-messages]
BOOST_HEADER_DEPRECATED( "the facilities in <boost/timer/timer.hpp>" )
^
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED'
# define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.")
                                    ^
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE'
# define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x)))
                                 ^
<scratch space>:10:2: note: expanded from here
 message("This header is deprecated. Use " "the facilities in <boost/timer/timer.hpp>" " instead.")
 ^
In file included from diag.cpp:9:
In file included from ./tdautils/ripsL2.h:8:
In file included from ./topology/dynamic-persistence.h:7:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include/boost/bind.hpp:36:1: warning: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior. [-W#pragma-messages]
BOOST_PRAGMA_MESSAGE(
^
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE'
# define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x)))
                                 ^
<scratch space>:113:2: note: expanded from here
 message("The practice of declaring the Bind placeholders (_1, _2, ...) " "in the global namespace is deprecated. Please use " "<boost/bind/bind.hpp> + using namespace boost::placeholders, " "or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.")
 ^
In file included from diag.cpp:13:
./tdautils/gridUtils.h:183:20: warning: unused variable 'value2' [-Wunused-variable]
     double value, value2;  // max of value and value 2 is the fcn value. 
                   ^
./tdautils/gridUtils.h:183:13: warning: unused variable 'value' [-Wunused-variable]
     double value, value2;  // max of value and value 2 is the fcn value. 
            ^
In file included from diag.cpp:16:
./tdautils/typecastUtils.h:350:12: warning: unused variable 'iFill' [-Wunused-variable]
  unsigned iFill = 0;
           ^
./tdautils/typecastUtils.h:394:12: warning: unused variable 'iFill' [-Wunused-variable]
  unsigned iFill = 0;
           ^
In file included from diag.cpp:19:
In file included from ./tdautils/gudhiUtils.h:13:
In file included from ./gudhi/Alpha_complex.h:15:
In file included from ./gudhi/Alpha_complex/Alpha_kernel_d.h:16:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Core:540:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from diag.cpp:19:
In file included from ./tdautils/gudhiUtils.h:13:
In file included from ./gudhi/Alpha_complex.h:26:
In file included from ./CGAL/Delaunay_triangulation.h:15:
In file included from ./CGAL/license/Triangulation.h:17:
./CGAL/config.h:124:9: warning: 'BOOST_PARAMETER_MAX_ARITY' macro redefined [-Wmacro-redefined]
#define BOOST_PARAMETER_MAX_ARITY 12
        ^
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include/boost/parameter/config.hpp:61:9: note: previous definition is here
#define BOOST_PARAMETER_MAX_ARITY BOOST_MPL_LIMIT_VECTOR_SIZE
        ^
In file included from diag.cpp:19:
In file included from ./tdautils/gudhiUtils.h:13:
In file included from ./gudhi/Alpha_complex.h:28:
In file included from ./CGAL/Epeck_d.h:17:
In file included from ./CGAL/NewKernel_d/Cartesian_base.h:17:
In file included from ./CGAL/NewKernel_d/Cartesian_LA_base.h:29:
In file included from ./CGAL/NewKernel_d/LA_eigen/LA.h:21:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Dense:2:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/LU:47:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from diag.cpp:19:
In file included from ./tdautils/gudhiUtils.h:13:
In file included from ./gudhi/Alpha_complex.h:28:
In file included from ./CGAL/Epeck_d.h:17:
In file included from ./CGAL/NewKernel_d/Cartesian_base.h:17:
In file included from ./CGAL/NewKernel_d/Cartesian_LA_base.h:29:
In file included from ./CGAL/NewKernel_d/LA_eigen/LA.h:21:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Dense:3:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Cholesky:12:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Jacobi:29:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from diag.cpp:19:
In file included from ./tdautils/gudhiUtils.h:13:
In file included from ./gudhi/Alpha_complex.h:28:
In file included from ./CGAL/Epeck_d.h:17:
In file included from ./CGAL/NewKernel_d/Cartesian_base.h:17:
In file included from ./CGAL/NewKernel_d/Cartesian_LA_base.h:29:
In file included from ./CGAL/NewKernel_d/LA_eigen/LA.h:21:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Dense:3:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Cholesky:43:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from diag.cpp:19:
In file included from ./tdautils/gudhiUtils.h:13:
In file included from ./gudhi/Alpha_complex.h:28:
In file included from ./CGAL/Epeck_d.h:17:
In file included from ./CGAL/NewKernel_d/Cartesian_base.h:17:
In file included from ./CGAL/NewKernel_d/Cartesian_LA_base.h:29:
In file included from ./CGAL/NewKernel_d/LA_eigen/LA.h:21:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Dense:4:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/QR:15:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Householder:27:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from diag.cpp:19:
In file included from ./tdautils/gudhiUtils.h:13:
In file included from ./gudhi/Alpha_complex.h:28:
In file included from ./CGAL/Epeck_d.h:17:
In file included from ./CGAL/NewKernel_d/Cartesian_base.h:17:
In file included from ./CGAL/NewKernel_d/Cartesian_LA_base.h:29:
In file included from ./CGAL/NewKernel_d/LA_eigen/LA.h:21:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Dense:4:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/QR:48:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from diag.cpp:19:
In file included from ./tdautils/gudhiUtils.h:13:
In file included from ./gudhi/Alpha_complex.h:28:
In file included from ./CGAL/Epeck_d.h:17:
In file included from ./CGAL/NewKernel_d/Cartesian_base.h:17:
In file included from ./CGAL/NewKernel_d/Cartesian_LA_base.h:29:
In file included from ./CGAL/NewKernel_d/LA_eigen/LA.h:21:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Dense:5:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/SVD:48:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from diag.cpp:19:
In file included from ./tdautils/gudhiUtils.h:13:
In file included from ./gudhi/Alpha_complex.h:28:
In file included from ./CGAL/Epeck_d.h:17:
In file included from ./CGAL/NewKernel_d/Cartesian_base.h:17:
In file included from ./CGAL/NewKernel_d/Cartesian_LA_base.h:29:
In file included from ./CGAL/NewKernel_d/LA_eigen/LA.h:21:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Dense:6:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Geometry:58:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from diag.cpp:19:
In file included from ./tdautils/gudhiUtils.h:13:
In file included from ./gudhi/Alpha_complex.h:28:
In file included from ./CGAL/Epeck_d.h:17:
In file included from ./CGAL/NewKernel_d/Cartesian_base.h:17:
In file included from ./CGAL/NewKernel_d/Cartesian_LA_base.h:29:
In file included from ./CGAL/NewKernel_d/LA_eigen/LA.h:21:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Dense:7:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/Eigenvalues:58:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from diag.cpp:34:
./kde.h:21:16: warning: unused variable 'pi' [-Wunused-variable]
  const double pi = 3.141592653589793;
               ^
In file included from diag.cpp:9:
In file included from ./tdautils/ripsL2.h:8:
In file included from ./topology/dynamic-persistence.h:332:
./topology/dynamic-persistence.hpp:60:73: warning: unused typedef 'TrailIterator' [-Wunused-local-typedef]
    typedef                 typename Element::Trail::iterator           TrailIterator;
                                                                        ^
In file included from diag.cpp:30:
./alphaComplex.h:45:9: warning: unused type alias 'Point' [-Wunused-local-typedef]
  using Point = Kernel::Point_d;
        ^
22 warnings generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o TDA.so RcppExports.o diag.o -lgmp -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
expr: syntax error
installing to /Volumes/Builds/packages/high-sierra-x86_64/results/4.2/TDA.Rcheck/00LOCK-TDA/00new/TDA/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TDA)