• using R version 4.4.1 (2024-06-14)
• using platform: x86_64-apple-darwin20
• R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 12.2.0
• running under: macOS Ventura 13.3.1
• using session charset: UTF-8
• checking for file ‘PathwaySpace/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘PathwaySpace’ version ‘1.0.2’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘PathwaySpace’ can be installed ... [6s/7s] WARNING Found the following significant warnings:   Note: possible error in 'findInterval(c(i - 0.5, ': unused argument (checkSorted = FALSE) See the install log for details. Information on the location(s) of code generating the ‘Note’s can be obtained by re-running with environment variable R_KEEP_PKG_SOURCE set to ‘yes’.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/3s] OK
• checking whether the package can be unloaded cleanly ... [1s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [7s/10s] NOTE .find_nn_positions : .find_positions: possible error in   findInterval(c(i - 0.5, i + 0.5), x_sorted, left.open = TRUE,   rightmost.closed = TRUE, checkSorted = FALSE): unused argument   (checkSorted = FALSE)
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [3s/3s] ERROR Running examples in ‘PathwaySpace-Ex.R’ failed The error most likely occurred in: > ### Name: circularProjection,PathwaySpace-method > ### Title: Spatial Projection of Graph-Associated Signals > ### Aliases: circularProjection,PathwaySpace-method circularProjection > > ### ** Examples > > # Load a demo igraph > data('gtoy1', package = 'RGraphSpace') > > # Create a new PathwaySpace object > ps <- buildPathwaySpace(gtoy1, nrc = 100) Validating arguments... Validating the 'igraph' object... Creating a 'PathwaySpace' object... > # note: adjust 'nrc' to increase image resolution > > # Set '1s' as vertex signal > vertexSignal(ps) <- 1 > > # Create a 2D-landscape image > ps <- circularProjection(ps) Validating arguments... Using circular projection... Mapping 'x' and 'y' coordinates... Running signal convolution... Error in findInterval(c(i - 0.5, i + 0.5), x_sorted, left.open = TRUE, :   unused argument (checkSorted = FALSE) Calls: circularProjection ... .find_nn_positions -> lapply -> FUN -> .find_positions Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [2s/2s] OK   Running ‘testthat.R’ [1s/2s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [15s/17s] OK
• checking PDF version of manual ... [6s/10s] OK
• DONE Status: 1 ERROR, 1 WARNING, 1 NOTE
• using check arguments '--no-clean-on-error '