Install log for 'Morpho'

* installing *source* package ‘Morpho’ ...
** package ‘Morpho’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c CVAdists.cpp -o CVAdists.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c CubeStuff.cpp -o CubeStuff.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c ang_calc.cpp -o ang_calc.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c armaGinvCpp.cpp -o armaGinvCpp.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c asymPerm.cpp -o asymPerm.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c barycenter.cpp -o barycenter.o
In file included from armaGinvCpp.cpp:1:
In file included from ./armaGinvCpp.h:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo:26:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:11: warning: NOTE: option ARMA_CRIPPLED_LAPACK is not supported [-W#pragma-messages]
  #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
          ^
In file included from CubeStuff.cpp:1:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo:26:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:11: warning: NOTE: option ARMA_CRIPPLED_LAPACK is not supported [-W#pragma-messages]
  #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
          ^
In file included from CVAdists.cpp:1:
In file included from ./CVAdists.h:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo:26:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:11: warning: NOTE: option ARMA_CRIPPLED_LAPACK is not supported [-W#pragma-messages]
  #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
          ^
In file included from asymPerm.cpp:1:
In file included from ./asymPerm.h:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo:26:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:11: warning: NOTE: option ARMA_CRIPPLED_LAPACK is not supported [-W#pragma-messages]
  #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
          ^
In file included from ang_calc.cpp:1:
In file included from ./doozers.h:7:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo:26:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:11: warning: NOTE: option ARMA_CRIPPLED_LAPACK is not supported [-W#pragma-messages]
  #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
          ^
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c covPCA.cpp -o covPCA.o
In file included from covPCA.cpp:1:
In file included from ./covPCA.h:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo:26:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:11: warning: NOTE: option ARMA_CRIPPLED_LAPACK is not supported [-W#pragma-messages]
  #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
          ^
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c createL.cpp -o createL.o
In file included from createL.cpp:1:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo:26:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:11: warning: NOTE: option ARMA_CRIPPLED_LAPACK is not supported [-W#pragma-messages]
  #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
          ^
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c doozers.cpp -o doozers.o
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c edgePlane.cpp -o edgePlane.o
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c face_zero.cpp -o face_zero.o
In file included from doozers.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo:26:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:11: warning: NOTE: option ARMA_CRIPPLED_LAPACK is not supported [-W#pragma-messages]
  #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
          ^
In file included from edgePlane.cpp:1:
In file included from ./doozers.h:7:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo:26:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:11: warning: NOTE: option ARMA_CRIPPLED_LAPACK is not supported [-W#pragma-messages]
  #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
          ^
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c fastSubsetMeans.cpp -o fastSubsetMeans.o
createL.cpp:14:9: warning: variable 'omp' set but not used [-Wunused-but-set-variable]
    int omp = 1;
        ^
In file included from fastSubsetMeans.cpp:1:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo:26:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:11: warning: NOTE: option ARMA_CRIPPLED_LAPACK is not supported [-W#pragma-messages]
  #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
          ^
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c init.c -o init.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c inscribeEllipse.cpp -o inscribeEllipse.o
In file included from inscribeEllipse.cpp:1:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo:26:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:11: warning: NOTE: option ARMA_CRIPPLED_LAPACK is not supported [-W#pragma-messages]
  #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
          ^
2 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c meshres.cpp -o meshres.o
In file included from meshres.cpp:1:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo:26:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:11: warning: NOTE: option ARMA_CRIPPLED_LAPACK is not supported [-W#pragma-messages]
  #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
          ^
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c permudistArma.cpp -o permudistArma.o
fastSubsetMeans.cpp:10:9: warning: unused variable 'threads' [-Wunused-variable]
    int threads = as<int>(threads_);
        ^
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c points2mesh.cpp -o points2mesh.o
In file included from permudistArma.cpp:1:
In file included from ./permudistArma.h:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo:26:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:11: warning: NOTE: option ARMA_CRIPPLED_LAPACK is not supported [-W#pragma-messages]
  #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
          ^
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c tpsfx.cpp -o tpsfx.o
In file included from points2mesh.cpp:1:
In file included from ./points2mesh.h:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo:26:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:11: warning: NOTE: option ARMA_CRIPPLED_LAPACK is not supported [-W#pragma-messages]
  #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
          ^
inscribeEllipse.cpp:98:13: warning: unused variable 's3' [-Wunused-variable]
      float s3 = step;
            ^
inscribeEllipse.cpp:82:11: warning: unused variable 'minrr' [-Wunused-variable]
    float minrr = 6;
          ^
inscribeEllipse.cpp:87:11: warning: unused variable 'bestx' [-Wunused-variable]
    float bestx = init_point[0];
          ^
inscribeEllipse.cpp:89:11: warning: unused variable 'besty' [-Wunused-variable]
    float besty = init_point[1];
          ^
inscribeEllipse.cpp:92:11: warning: variable 'bestiter' set but not used [-Wunused-but-set-variable]
    float bestiter = 0;
          ^
In file included from tpsfx.cpp:1:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo:26:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:11: warning: NOTE: option ARMA_CRIPPLED_LAPACK is not supported [-W#pragma-messages]
  #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
          ^
2 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c tweakU.cpp -o tweakU.o
permudistArma.cpp:9:10: warning: unused variable 'usemedian' [-Wunused-variable]
    bool usemedian = Rcpp::as<bool>(usemedian_);
         ^
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I/opt/R/x86_64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c updateNormals.cpp -o updateNormals.o
tpsfx.cpp:24:9: warning: unused variable 'threads' [-Wunused-variable]
    int threads = as<int>(threads_);
        ^
6 warnings generated.
In file included from updateNormals.cpp:1:
In file included from ./updateNormals.h:4:
In file included from ./doozers.h:7:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo:26:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:11: warning: NOTE: option ARMA_CRIPPLED_LAPACK is not supported [-W#pragma-messages]
  #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
          ^
2 warnings generated.
2 warnings generated.
1 warning generated.
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o Morpho.so CVAdists.o CubeStuff.o ang_calc.o armaGinvCpp.o asymPerm.o barycenter.o covPCA.o createL.o doozers.o edgePlane.o face_zero.o fastSubsetMeans.o init.o inscribeEllipse.o meshres.o permudistArma.o points2mesh.o tpsfx.o tweakU.o updateNormals.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.4/Morpho.Rcheck/00LOCK-Morpho/00new/Morpho/libs
** generating debug symbols (dSYM)
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Morpho)