• using R version 3.6.2 (2019-12-12)
  • using platform: x86_64-apple-darwin15.6.0 (64-bit)
  • using session charset: UTF-8
  • checking for file ‘LMest/DESCRIPTION’ ... OK
  • this is package ‘LMest’ version ‘3.0.1’
  • package encoding: UTF-8
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking for hidden files and directories ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking whether package ‘LMest’ can be installed ... [26s/26s] OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking ‘build’ directory ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking for left-over files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking loading without being on the library search path ... OK
  • checking dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... [56s/56s] NOTE
    plot.LMbasic: no visible global function definition for ‘plot’
    plot.LMbasiccont: no visible global function definition for ‘plot’
    plot.LMlatent: no visible global function definition for ‘plot’
    plot.LMlatentcont: no visible global function definition for ‘plot’
    Undefined global functions or variables:
      plot
    Consider adding
      importFrom("graphics", "plot")
    to your NAMESPACE file.
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of ‘data’ directory ... OK
  • checking data for non-ASCII characters ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking line endings in C/C++/Fortran sources/headers ... OK
  • checking line endings in Makefiles ... OK
  • checking compilation flags in Makevars ... OK
  • checking for GNU extensions in Makefiles ... OK
  • checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
  • checking compiled code ... OK
  • checking installed files from ‘inst/doc’ ... OK
  • checking files in ‘vignettes’ ... OK
  • checking examples ... ERROR
    Running examples in ‘LMest-Ex.R’ failed
    The error most likely occurred in:

    > ### Name: lmest
    > ### Title: Estimate Latent Markov models for categorical responses
    > ### Aliases: lmest
    >
    > ### ** Examples
    >
    > ### Basic LM model
    >
    > data("data_SRHS_long")
    > SRHS <- data_SRHS_long[1:2400,]
    >
    > # Categories rescaled to vary from 0 (“poor”) to 4 (“excellent”)
    >
    > SRHS$srhs <- 5 - SRHS$srhs
    >
    > out <- lmest(responsesFormula = srhs ~ NULL,
    + index = c("id","t"),
    + data = SRHS,
    + k = 3,
    + start = 1,
    + modBasic = 1,
    + seed = 123)
    Error in dimnames(Y) <- `*vtmp*` : 'dimnames' must be a list
    Calls: lmest
    Execution halted
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes in ‘inst/doc’ ... OK
  • checking running R code from vignettes ... [0s/0s] NONE
      ‘vignetteLMest.Rmd’using ‘UTF-8’... [0s/0s] OK
  • checking re-building of vignette outputs ... [97s/98s] OK
  • checking PDF version of manual ... OK
  • DONE
    Status: 1 ERROR, 1 NOTE