• using R version 4.4.0 (2024-04-24)
  • using platform: x86_64-apple-darwin20
  • R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 12.2.0
  • running under: macOS Ventura 13.3.1
  • using session charset: UTF-8
  • checking for file ‘ImputeLongiCovs/DESCRIPTION’ ... OK
  • checking extension type ... Package
  • this is package ‘ImputeLongiCovs’ version ‘0.1.0’
  • package encoding: UTF-8
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking for hidden files and directories ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking whether package ‘ImputeLongiCovs’ can be installed ... [2s/2s] OK See the install log for details.
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking ‘build’ directory ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking for left-over files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking code files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... [0s/0s] OK
  • checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
  • checking whether the package can be unloaded cleanly ... [0s/0s] OK
  • checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
  • checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
  • checking loading without being on the library search path ... [0s/0s] OK
  • checking dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... [2s/2s] OK
  • checking Rd files ... [0s/0s] NOTE checkRd: (-1) analyses_data.Rd:19: Lost braces; missing escapes or markup?     19 | \item {patient_id}: {Unique identifier for each patient}        | ^ checkRd: (-1) analyses_data.Rd:20: Lost braces; missing escapes or markup?     20 | \item {tran_Year}: {numeric, starting from 1 up to the number of transitions}        | ^ checkRd: (-1) analyses_data.Rd:21: Lost braces; missing escapes or markup?     21 | \item {transition_year}: {text explanation of the transition}        | ^ checkRd: (-1) analyses_data.Rd:22: Lost braces; missing escapes or markup?     22 | \item {state_from}: {the state at the beginning of a transition}        | ^ checkRd: (-1) analyses_data.Rd:23: Lost braces; missing escapes or markup?     23 | \item {state_to}: {the state at the end of a transition}        | ^ checkRd: (-1) analyses_data.Rd:24: Lost braces; missing escapes or markup?     24 | \item {prob_matrix}: {the probability matrix that was generated by the initial data}        | ^ checkRd: (-1) analyses_data.Rd:25: Lost braces; missing escapes or markup?     25 | \item {cardio_state_from}: {cardiovascular disease at the beginning of the transition, binary, if 1 == Yes, else No}        | ^ checkRd: (-1) analyses_data.Rd:26: Lost braces; missing escapes or markup?     26 | \item {cardio_state_to}: {cardiovascular disease at the end of the transition, binary, if 1 == Yes, else No}        | ^ checkRd: (-1) analyses_data.Rd:27: Lost braces; missing escapes or markup?     27 | \item {flu_vaccination_state_from}: {flu vaccination at the end of the transition, binary, if 1 == Yes, else No}        | ^ checkRd: (-1) analyses_data.Rd:28: Lost braces; missing escapes or markup?     28 | \item {flu_vaccination_state_to}: {flu vaccination disease at the end of the transition, binary, if 1 == Yes, else No}        | ^ checkRd: (-1) initial_data.Rd:19: Lost braces; missing escapes or markup?     19 | \item {patient_id}: {Unique identifier for each patient}        | ^ checkRd: (-1) initial_data.Rd:20: Lost braces; missing escapes or markup?     20 | \item {tran_Year}: {numeric, starting from 1 up to the number of transitions}        | ^ checkRd: (-1) initial_data.Rd:21: Lost braces; missing escapes or markup?     21 | \item {transition_year}: {text explanation of the transition}        | ^ checkRd: (-1) initial_data.Rd:22: Lost braces; missing escapes or markup?     22 | \item {state_from}: {the state at the beginning of a transition}        | ^ checkRd: (-1) initial_data.Rd:23: Lost braces; missing escapes or markup?     23 | \item {state_to}: {the state at the end of a transition}        | ^ checkRd: (-1) initial_data.Rd:24: Lost braces; missing escapes or markup?     24 | \item {cardio_state_from}: {cardiovascular disease at the beginning of the transition, binary, if 1 == Yes, else No}        | ^ checkRd: (-1) initial_data.Rd:25: Lost braces; missing escapes or markup?     25 | \item {cardio_state_to}: {cardiovascular disease at the end of the transition, binary, if 1 == Yes, else No}        | ^ checkRd: (-1) initial_data.Rd:26: Lost braces; missing escapes or markup?     26 | \item {flu_vaccination_state_from}: {flu vaccination at the end of the transition, binary, if 1 == Yes, else No}        | ^ checkRd: (-1) initial_data.Rd:27: Lost braces; missing escapes or markup?     27 | \item {flu_vaccination_state_to}: {flu vaccination disease at the end of the transition, binary, if 1 == Yes, else No}        | ^
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of ‘data’ directory ... OK
  • checking data for non-ASCII characters ... [0s/0s] OK
  • checking LazyData ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking installed files from ‘inst/doc’ ... OK
  • checking files in ‘vignettes’ ... OK
  • checking examples ... [8s/9s] OK
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes ... OK
  • checking re-building of vignette outputs ... [14s/16s] OK
  • checking PDF version of manual ... [5s/5s] OK
  • DONE Status: 1 NOTE
  • using check arguments '--no-clean-on-error '