Check results for 'IDLFM'

using R version 4.4.1 (2024-06-14)
using platform: x86_64-apple-darwin20
R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0
running under: macOS Ventura 13.3.1
using session charset: UTF-8
checking for file ‘IDLFM/DESCRIPTION’ ... OK
this is package ‘IDLFM’ version ‘1.0.0’
package encoding: UTF-8
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘IDLFM’ can be installed ... [11s/16s] WARNING Found the following significant warnings: Note: possible error in 'SVT_SparseArray(dim = c(n_patients, ': unused argument (dim = c(n_patients, n_var, time)) Note: possible error in 'SVT_SparseArray(dim = c(n_patients, ': unused argument (dim = c(n_patients, 1, time)) See the install log for details. Information on the location(s) of code generating the ‘Note’s can be obtained by re-running with environment variable R_KEEP_PKG_SOURCE set to ‘yes’.
checking installed package size ... OK
checking package directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking code files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [4s/5s] OK
checking whether the package can be loaded with stated dependencies ... [4s/4s] OK
checking whether the package can be unloaded cleanly ... [4s/4s] OK
checking whether the namespace can be loaded with stated dependencies ... [4s/6s] OK
checking whether the namespace can be unloaded cleanly ... [3s/4s] OK
checking loading without being on the library search path ... [3s/3s] OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [8s/13s] NOTE generate_data: possible error in SVT_SparseArray(dim = c(n_patients, n_var, time)): unused argument (dim = c(n_patients, n_var, time)) generate_data: possible error in SVT_SparseArray(dim = c(n_patients, 1, time)): unused argument (dim = c(n_patients, 1, time))
checking Rd files ... [0s/0s] OK
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checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking examples ... [4s/5s] ERROR Running examples in ‘IDLFM-Ex.R’ failed The error most likely occurred in: > ### Name: IDLFM > ### Title: Individualized Dynamic Latent Factor Model > ### Aliases: IDLFM > > ### ** Examples > > library(splines) > #if (!require("BiocManager", quietly = TRUE)) > #install.packages("BiocManager") > #BiocManager::install("SparseArray") > library(SparseArray) Loading required package: Matrix Loading required package: BiocGenerics Attaching package: ‘BiocGenerics’ The following objects are masked from ‘package:stats’: IQR, mad, sd, var, xtabs The following objects are masked from ‘package:base’: Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply, union, unique, unsplit, which.max, which.min Loading required package: MatrixGenerics Loading required package: matrixStats Attaching package: ‘MatrixGenerics’ The following objects are masked from ‘package:matrixStats’: colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, colCounts, colCummaxs, colCummins, colCumprods, colCumsums, colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, colWeightedMeans, colWeightedMedians, colWeightedSds, colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, rowWeightedMads, rowWeightedMeans, rowWeightedMedians, rowWeightedSds, rowWeightedVars Loading required package: S4Vectors Loading required package: stats4 Attaching package: ‘S4Vectors’ The following objects are masked from ‘package:Matrix’: expand, unname The following object is masked from ‘package:utils’: findMatches The following objects are masked from ‘package:base’: I, expand.grid, unname Loading required package: S4Arrays Loading required package: abind Loading required package: IRanges Attaching package: ‘S4Arrays’ The following object is masked from ‘package:abind’: abind The following object is masked from ‘package:base’: rowsum > > I <- 3 > J <- 5 > time <- 1000 > R <- 3 > k <- 3 > N <- 300 > idx_x <- randomSparseArray(c(I, J, time), density=0.8) > idx_y_train <- randomSparseArray(c(I, 1, time), density=0.2) > idx_y_test <- randomSparseArray(c(I, 1, time), density=0.2) > data <- generate_data(I, J, time, idx_x, idx_y_train, R, k, N) Error: unable to find an inherited method for function ‘nzcount’ for signature ‘x = "numeric"’ Execution halted
checking for unstated dependencies in ‘tests’ ... OK
checking tests ... [4s/7s] OK Running ‘testthat.R’ [4s/7s]
checking PDF version of manual ... [7s/8s] OK
DONE Status: 1 ERROR, 1 WARNING, 1 NOTE
using check arguments '--no-clean-on-error '