* installing *source* package ‘ICcalib’ ...
** package ‘ICcalib’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c CalcNablabeetaUbeta.cpp -o CalcNablabeetaUbeta.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c CalcNablabeetaUgamma.cpp -o CalcNablabeetaUgamma.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c CalcSurvFromNPMLE.cpp -o CalcSurvFromNPMLE.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c CalcUbetabeeta.cpp -o CalcUbetabeeta.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c CalcUbetabeetaRS.cpp -o CalcUbetabeetaRS.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c Calcb.cpp -o Calcb.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c CalcbZ.cpp -o CalcbZ.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c CoxLogLik.cpp -o CoxLogLik.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c CoxLogLikGrad.cpp -o CoxLogLikGrad.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c CoxLogLikHess.cpp -o CoxLogLikHess.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c CoxLogLikNoBeta.cpp -o CoxLogLikNoBeta.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c CoxLogLikX.cpp -o CoxLogLikX.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c FindIntervalCPP.cpp -o FindIntervalCPP.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c FindIntervalCalibCPP.cpp -o FindIntervalCalibCPP.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c FindIntervalCalibCPPvec.cpp -o FindIntervalCalibCPPvec.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c ICcalib_init.c -o ICcalib_init.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c myFmyHess.cpp -o myFmyHess.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o ICcalib.so CalcNablabeetaUbeta.o CalcNablabeetaUgamma.o CalcSurvFromNPMLE.o CalcUbetabeeta.o CalcUbetabeetaRS.o Calcb.o CalcbZ.o CoxLogLik.o CoxLogLikGrad.o CoxLogLikHess.o CoxLogLikNoBeta.o CoxLogLikX.o FindIntervalCPP.o FindIntervalCalibCPP.o FindIntervalCalibCPPvec.o ICcalib_init.o RcppExports.o myFmyHess.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/high-sierra-x86_64/results/4.2/ICcalib.Rcheck/00LOCK-ICcalib/00new/ICcalib/libs
** generating debug symbols (dSYM)
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ICcalib)