* installing *source* package ‘ForceChoice’ ... ** this is package ‘ForceChoice’ version ‘1.0.1’ ** package ‘ForceChoice’ successfully unpacked and MD5 sums checked ** using staged installation Registered S3 methods overwritten by 'RcppEigen': method from predict.fastLm RcppArmadillo print.fastLm RcppArmadillo summary.fastLm RcppArmadillo print.summary.fastLm RcppArmadillo ** libs using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using C++17 using SDK: ‘MacOSX11.3.1.sdk’ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:5: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from RcppExports.cpp:5: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from RcppExports.cpp:5: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from RcppExports.cpp:5: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ 5 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -falign-functions=64 -Wall -g -O2 -c fcggum_istem_fast.cpp -o fcggum_istem_fast.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -falign-functions=64 -Wall -g -O2 -c gibbs_theta_fast.cpp -o gibbs_theta_fast.o In file included from gibbs_theta_fast.cpp:5: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from gibbs_theta_fast.cpp:5: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from gibbs_theta_fast.cpp:5: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from gibbs_theta_fast.cpp:5: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ gibbs_theta_fast.cpp:43:8: warning: unused function 'mirt_person_loglik' [-Wunused-function] double mirt_person_loglik(const double* x, int person, const MatrixXd& par, ^ gibbs_theta_fast.cpp:61:8: warning: unused function 'mgpcm_person_loglik' [-Wunused-function] double mgpcm_person_loglik(const double* x, int person, const MatrixXd& par, ^ gibbs_theta_fast.cpp:79:8: warning: unused function 'mggum_person_loglik' [-Wunused-function] double mggum_person_loglik(const double* x, int person, const MatrixXd& par, ^ gibbs_theta_fast.cpp:206:8: warning: unused function 'fcmirt_person_loglik' [-Wunused-function] double fcmirt_person_loglik(const double* x, int person, const MatrixXd& par, ^ gibbs_theta_fast.cpp:231:8: warning: unused function 'fcggum_person_loglik' [-Wunused-function] double fcggum_person_loglik(const double* x, int person, const MatrixXd& par, ^ 10 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -falign-functions=64 -Wall -g -O2 -c gibbs_tirt.cpp -o gibbs_tirt.o In file included from gibbs_tirt.cpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from gibbs_tirt.cpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from gibbs_tirt.cpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from gibbs_tirt.cpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ gibbs_tirt.cpp:26:8: warning: unused function 'tirt_person_loglik' [-Wunused-function] double tirt_person_loglik(const double* x, ^ 6 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -falign-functions=64 -Wall -g -O2 -c gof_fast.cpp -o gof_fast.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -falign-functions=64 -Wall -g -O2 -c item_loglik.cpp -o item_loglik.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -falign-functions=64 -Wall -g -O2 -c model_prob_fast.cpp -o model_prob_fast.o In file included from model_prob_fast.cpp:3: In file included from ./istem_gibbs_grid.h:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from model_prob_fast.cpp:3: In file included from ./istem_gibbs_grid.h:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from model_prob_fast.cpp:3: In file included from ./istem_gibbs_grid.h:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from model_prob_fast.cpp:3: In file included from ./istem_gibbs_grid.h:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ model_prob_fast.cpp:346:18: warning: unused variable 'kFcdcmLogFloor' [-Wunused-const-variable] constexpr double kFcdcmLogFloor = -27.631021115928547; // log(1e-12) ^ model_prob_fast.cpp:560:8: warning: unused function 'fcdcm_log_alpha_row' [-Wunused-function] double fcdcm_log_alpha_row(double theta, ^ 7 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -falign-functions=64 -Wall -g -O2 -c stanExports_FCDCM.cc -o stanExports_FCDCM.o In file included from stanExports_FCDCM.cc:5: In file included from ./stanExports_FCDCM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from stanExports_FCDCM.cc:5: In file included from ./stanExports_FCDCM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from stanExports_FCDCM.cc:5: In file included from ./stanExports_FCDCM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_FCDCM.cc:5: In file included from ./stanExports_FCDCM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_FCDCM.cc:5: In file included from ./stanExports_FCDCM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from stanExports_FCDCM.cc:5: In file included from ./stanExports_FCDCM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from stanExports_FCDCM.cc:5: In file included from ./stanExports_FCDCM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:43: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim.hpp:18: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/prob.hpp:290: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable] static constexpr const char* function = "student_t_qf"; ^ In file included from stanExports_FCDCM.cc:5: In file included from ./stanExports_FCDCM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:49: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:16: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob.hpp:7: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable] const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable] const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0); ^ In file included from stanExports_FCDCM.cc:5: In file included from ./stanExports_FCDCM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:54: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/optimize/newton.hpp:98:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = 0; ^ In file included from stanExports_FCDCM.cc:5: In file included from ./stanExports_FCDCM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = stan::services::error_codes::CONFIG; ^ In file included from stanExports_FCDCM.cc:5: In file included from ./stanExports_FCDCM.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/model_header.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:7: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:520:22: warning: unused variable 'rows' [-Wunused-variable] const Eigen::Index rows = row_idx.ns_.size(); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:521:22: warning: unused variable 'cols' [-Wunused-variable] const Eigen::Index cols = col_idx.ns_.size(); ^ In file included from stanExports_FCDCM.cc:5: ./stanExports_FCDCM.h:418:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable] int pos__ = std::numeric_limits::min(); ^ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -falign-functions=64 -Wall -g -O2 -c stanExports_FCGDINA.cc -o stanExports_FCGDINA.o In file included from stanExports_FCGDINA.cc:5: In file included from ./stanExports_FCGDINA.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from stanExports_FCGDINA.cc:5: In file included from ./stanExports_FCGDINA.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from stanExports_FCGDINA.cc:5: In file included from ./stanExports_FCGDINA.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_FCGDINA.cc:5: In file included from ./stanExports_FCGDINA.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_FCGDINA.cc:5: In file included from ./stanExports_FCGDINA.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from stanExports_FCGDINA.cc:5: In file included from ./stanExports_FCGDINA.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from stanExports_FCDCM.cc:5: In file included from ./stanExports_FCDCM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:49: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:11: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint.hpp:14: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint/lub_constrain.hpp:215:19: warning: lambda capture 'ub' is not used [-Wunused-lambda-capture] [arena_x, ub, lb, ret, lp, diff, inv_logit_x]() mutable { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/constraint/lub_constrain.hpp:403:12: note: in instantiation of function template specialization 'stan::math::lub_constrain, -1, 1, 0>, 0>, int, double, nullptr, nullptr, nullptr>' requested here return lub_constrain(std::forward(x), std::forward(lb), ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/io/deserializer.hpp:434:24: note: in instantiation of function template specialization 'stan::math::lub_constrain, -1, 1, 0>, 0>, const int &, const double &, stan::math::var_value, nullptr>' requested here return stan::math::lub_constrain(this->read(sizes...), lb, ^ ./stanExports_FCDCM.h:857:23: note: in instantiation of function template specialization 'stan::io::deserializer>::read_constrain_lub, -1, 1, 0>, true, int, double, stan::math::var_value, int>' requested here in__.template read_constrain_lub< ^ ./stanExports_FCDCM.h:1375:12: note: in instantiation of function template specialization 'model_FCDCM_namespace::model_FCDCM::log_prob_impl>, std::vector, nullptr, nullptr, nullptr>' requested here return log_prob_impl(params_r, params_i, pstream); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_FCDCM_namespace::model_FCDCM::log_prob>' requested here var adLogProb = model.template log_prob( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/util/initialize.hpp:169:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here log_prob = stan::model::log_prob_grad( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here std::vector cont_vector = util::initialize( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here return_code = stan::services::diagnose::diagnose(model, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here ret = command(args, model_, holder, names_oi_tidx_, ^ stanExports_FCDCM.cc:15:73: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here .method("call_sampler", &rstan::stan_fit ::call_sampler) ^ In file included from stanExports_FCDCM.cc:5: In file included from ./stanExports_FCDCM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:49: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:11: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint.hpp:14: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint/lub_constrain.hpp:215:23: warning: lambda capture 'lb' is not used [-Wunused-lambda-capture] [arena_x, ub, lb, ret, lp, diff, inv_logit_x]() mutable { ^ In file included from stanExports_FCGDINA.cc:5: In file included from ./stanExports_FCGDINA.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:43: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim.hpp:18: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/prob.hpp:290: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable] static constexpr const char* function = "student_t_qf"; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint/lub_constrain.hpp:170:37: warning: lambda capture 'ub' is not used [-Wunused-lambda-capture] reverse_pass_callback([arena_x, ub, lb, ret, diff, inv_logit_x]() mutable { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/constraint/lub_constrain.hpp:406:12: note: in instantiation of function template specialization 'stan::math::lub_constrain, -1, 1, 0>, 0>, int, double, nullptr, nullptr, nullptr>' requested here return lub_constrain(std::forward(x), std::forward(lb), ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/io/deserializer.hpp:434:24: note: in instantiation of function template specialization 'stan::math::lub_constrain, -1, 1, 0>, 0>, const int &, const double &, stan::math::var_value, nullptr>' requested here return stan::math::lub_constrain(this->read(sizes...), lb, ^ ./stanExports_FCDCM.h:857:23: note: in instantiation of function template specialization 'stan::io::deserializer>::read_constrain_lub, -1, 1, 0>, false, int, double, stan::math::var_value, int>' requested here in__.template read_constrain_lub< ^ ./stanExports_FCDCM.h:1375:12: note: in instantiation of function template specialization 'model_FCDCM_namespace::model_FCDCM::log_prob_impl>, std::vector, nullptr, nullptr, nullptr>' requested here return log_prob_impl(params_r, params_i, pstream); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_FCDCM_namespace::model_FCDCM::log_prob>' requested here var adLogProb = model.template log_prob( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/util/initialize.hpp:169:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here log_prob = stan::model::log_prob_grad( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/optimize/newton.hpp:54:25: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here cont_vector = util::initialize(model, init, rng, init_radius, false, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:502:35: note: in instantiation of function template specialization 'stan::services::optimize::newton' requested here = stan::services::optimize::newton(model, *init_context_ptr, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here ret = command(args, model_, holder, names_oi_tidx_, ^ stanExports_FCDCM.cc:15:73: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here .method("call_sampler", &rstan::stan_fit ::call_sampler) ^ In file included from stanExports_FCDCM.cc:5: In file included from ./stanExports_FCDCM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:49: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:11: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint.hpp:14: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint/lub_constrain.hpp:170:41: warning: lambda capture 'lb' is not used [-Wunused-lambda-capture] reverse_pass_callback([arena_x, ub, lb, ret, diff, inv_logit_x]() mutable { ^ In file included from stanExports_FCGDINA.cc:5: In file included from ./stanExports_FCGDINA.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:49: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:16: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob.hpp:7: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable] const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable] const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0); ^ In file included from stanExports_FCGDINA.cc:5: In file included from ./stanExports_FCGDINA.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:54: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/optimize/newton.hpp:98:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = 0; ^ In file included from stanExports_FCGDINA.cc:5: In file included from ./stanExports_FCGDINA.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = stan::services::error_codes::CONFIG; ^ In file included from stanExports_FCGDINA.cc:5: In file included from ./stanExports_FCGDINA.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/model_header.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:7: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:520:22: warning: unused variable 'rows' [-Wunused-variable] const Eigen::Index rows = row_idx.ns_.size(); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:521:22: warning: unused variable 'cols' [-Wunused-variable] const Eigen::Index cols = col_idx.ns_.size(); ^ In file included from stanExports_FCGDINA.cc:5: ./stanExports_FCGDINA.h:371:9: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] int nrow = std::numeric_limits::min(); ^ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -falign-functions=64 -Wall -g -O2 -c stanExports_FCGGUM.cc -o stanExports_FCGGUM.o In file included from stanExports_FCGGUM.cc:5: In file included from ./stanExports_FCGGUM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from stanExports_FCGGUM.cc:5: In file included from ./stanExports_FCGGUM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from stanExports_FCGGUM.cc:5: In file included from ./stanExports_FCGGUM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_FCGGUM.cc:5: In file included from ./stanExports_FCGGUM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_FCGGUM.cc:5: In file included from ./stanExports_FCGGUM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from stanExports_FCGGUM.cc:5: In file included from ./stanExports_FCGGUM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from stanExports_FCGGUM.cc:5: In file included from ./stanExports_FCGGUM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:43: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim.hpp:18: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/prob.hpp:290: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable] static constexpr const char* function = "student_t_qf"; ^ In file included from stanExports_FCGGUM.cc:5: In file included from ./stanExports_FCGGUM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:49: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:16: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob.hpp:7: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable] const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable] const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0); ^ In file included from stanExports_FCGGUM.cc:5: In file included from ./stanExports_FCGGUM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:54: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/optimize/newton.hpp:98:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = 0; ^ In file included from stanExports_FCGGUM.cc:5: In file included from ./stanExports_FCGGUM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = stan::services::error_codes::CONFIG; ^ In file included from stanExports_FCGGUM.cc:5: In file included from ./stanExports_FCGGUM.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/model_header.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:7: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:520:22: warning: unused variable 'rows' [-Wunused-variable] const Eigen::Index rows = row_idx.ns_.size(); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:521:22: warning: unused variable 'cols' [-Wunused-variable] const Eigen::Index cols = col_idx.ns_.size(); ^ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -falign-functions=64 -Wall -g -O2 -c stanExports_FCMIRT.cc -o stanExports_FCMIRT.o In file included from stanExports_FCMIRT.cc:5: In file included from ./stanExports_FCMIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from stanExports_FCMIRT.cc:5: In file included from ./stanExports_FCMIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from stanExports_FCMIRT.cc:5: In file included from ./stanExports_FCMIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_FCMIRT.cc:5: In file included from ./stanExports_FCMIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_FCMIRT.cc:5: In file included from ./stanExports_FCMIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from stanExports_FCMIRT.cc:5: In file included from ./stanExports_FCMIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from stanExports_FCMIRT.cc:5: In file included from ./stanExports_FCMIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:43: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim.hpp:18: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/prob.hpp:290: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable] static constexpr const char* function = "student_t_qf"; ^ In file included from stanExports_FCMIRT.cc:5: In file included from ./stanExports_FCMIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:49: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:16: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob.hpp:7: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable] const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable] const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0); ^ In file included from stanExports_FCMIRT.cc:5: In file included from ./stanExports_FCMIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:54: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/optimize/newton.hpp:98:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = 0; ^ In file included from stanExports_FCMIRT.cc:5: In file included from ./stanExports_FCMIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = stan::services::error_codes::CONFIG; ^ In file included from stanExports_FCMIRT.cc:5: In file included from ./stanExports_FCMIRT.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/model_header.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:7: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:520:22: warning: unused variable 'rows' [-Wunused-variable] const Eigen::Index rows = row_idx.ns_.size(); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:521:22: warning: unused variable 'cols' [-Wunused-variable] const Eigen::Index cols = col_idx.ns_.size(); ^ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -falign-functions=64 -Wall -g -O2 -c stanExports_MGGUM.cc -o stanExports_MGGUM.o In file included from stanExports_MGGUM.cc:5: In file included from ./stanExports_MGGUM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from stanExports_MGGUM.cc:5: In file included from ./stanExports_MGGUM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from stanExports_MGGUM.cc:5: In file included from ./stanExports_MGGUM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_MGGUM.cc:5: In file included from ./stanExports_MGGUM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_MGGUM.cc:5: In file included from ./stanExports_MGGUM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from stanExports_MGGUM.cc:5: In file included from ./stanExports_MGGUM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from stanExports_FCMIRT.cc:5: In file included from ./stanExports_FCMIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:49: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:11: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint.hpp:14: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint/lub_constrain.hpp:215:19: warning: lambda capture 'ub' is not used [-Wunused-lambda-capture] [arena_x, ub, lb, ret, lp, diff, inv_logit_x]() mutable { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/constraint/lub_constrain.hpp:403:12: note: in instantiation of function template specialization 'stan::math::lub_constrain, -1, 1, 0>, 0>, double, double, nullptr, nullptr, nullptr>' requested here return lub_constrain(std::forward(x), std::forward(lb), ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/io/deserializer.hpp:434:24: note: in instantiation of function template specialization 'stan::math::lub_constrain, -1, 1, 0>, 0>, const double &, const double &, stan::math::var_value, nullptr>' requested here return stan::math::lub_constrain(this->read(sizes...), lb, ^ ./stanExports_FCMIRT.h:1423:23: note: in instantiation of function template specialization 'stan::io::deserializer>::read_constrain_lub, -1, 1, 0>, true, double, double, stan::math::var_value, int>' requested here in__.template read_constrain_lub< ^ ./stanExports_FCMIRT.h:2347:12: note: in instantiation of function template specialization 'model_FCMIRT_namespace::model_FCMIRT::log_prob_impl>, std::vector, nullptr, nullptr, nullptr>' requested here return log_prob_impl(params_r, params_i, pstream); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_FCMIRT_namespace::model_FCMIRT::log_prob>' requested here var adLogProb = model.template log_prob( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/util/initialize.hpp:169:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here log_prob = stan::model::log_prob_grad( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here std::vector cont_vector = util::initialize( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here return_code = stan::services::diagnose::diagnose(model, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here ret = command(args, model_, holder, names_oi_tidx_, ^ stanExports_FCMIRT.cc:15:73: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here .method("call_sampler", &rstan::stan_fit ::call_sampler) ^ In file included from stanExports_FCMIRT.cc:5: In file included from ./stanExports_FCMIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:49: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:11: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint.hpp:14: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint/lub_constrain.hpp:215:23: warning: lambda capture 'lb' is not used [-Wunused-lambda-capture] [arena_x, ub, lb, ret, lp, diff, inv_logit_x]() mutable { ^ In file included from stanExports_MGGUM.cc:5: In file included from ./stanExports_MGGUM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:43: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim.hpp:18: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/prob.hpp:290: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable] static constexpr const char* function = "student_t_qf"; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint/lub_constrain.hpp:170:37: warning: lambda capture 'ub' is not used [-Wunused-lambda-capture] reverse_pass_callback([arena_x, ub, lb, ret, diff, inv_logit_x]() mutable { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/constraint/lub_constrain.hpp:406:12: note: in instantiation of function template specialization 'stan::math::lub_constrain, -1, 1, 0>, 0>, double, double, nullptr, nullptr, nullptr>' requested here return lub_constrain(std::forward(x), std::forward(lb), ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/io/deserializer.hpp:434:24: note: in instantiation of function template specialization 'stan::math::lub_constrain, -1, 1, 0>, 0>, const double &, const double &, stan::math::var_value, nullptr>' requested here return stan::math::lub_constrain(this->read(sizes...), lb, ^ ./stanExports_FCMIRT.h:1423:23: note: in instantiation of function template specialization 'stan::io::deserializer>::read_constrain_lub, -1, 1, 0>, false, double, double, stan::math::var_value, int>' requested here in__.template read_constrain_lub< ^ ./stanExports_FCMIRT.h:2347:12: note: in instantiation of function template specialization 'model_FCMIRT_namespace::model_FCMIRT::log_prob_impl>, std::vector, nullptr, nullptr, nullptr>' requested here return log_prob_impl(params_r, params_i, pstream); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_FCMIRT_namespace::model_FCMIRT::log_prob>' requested here var adLogProb = model.template log_prob( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/util/initialize.hpp:169:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here log_prob = stan::model::log_prob_grad( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/optimize/newton.hpp:54:25: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here cont_vector = util::initialize(model, init, rng, init_radius, false, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:502:35: note: in instantiation of function template specialization 'stan::services::optimize::newton' requested here = stan::services::optimize::newton(model, *init_context_ptr, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here ret = command(args, model_, holder, names_oi_tidx_, ^ stanExports_FCMIRT.cc:15:73: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here .method("call_sampler", &rstan::stan_fit ::call_sampler) ^ In file included from stanExports_FCMIRT.cc:5: In file included from ./stanExports_FCMIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:49: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:11: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint.hpp:14: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint/lub_constrain.hpp:170:41: warning: lambda capture 'lb' is not used [-Wunused-lambda-capture] reverse_pass_callback([arena_x, ub, lb, ret, diff, inv_logit_x]() mutable { ^ In file included from stanExports_MGGUM.cc:5: In file included from ./stanExports_MGGUM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:49: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:16: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob.hpp:7: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable] const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable] const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0); ^ In file included from stanExports_MGGUM.cc:5: In file included from ./stanExports_MGGUM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:54: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/optimize/newton.hpp:98:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = 0; ^ In file included from stanExports_MGGUM.cc:5: In file included from ./stanExports_MGGUM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = stan::services::error_codes::CONFIG; ^ In file included from stanExports_MGGUM.cc:5: In file included from ./stanExports_MGGUM.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/model_header.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:7: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:520:22: warning: unused variable 'rows' [-Wunused-variable] const Eigen::Index rows = row_idx.ns_.size(); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:521:22: warning: unused variable 'cols' [-Wunused-variable] const Eigen::Index cols = col_idx.ns_.size(); ^ 19 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -falign-functions=64 -Wall -g -O2 -c stanExports_MGPCM.cc -o stanExports_MGPCM.o In file included from stanExports_MGPCM.cc:5: In file included from ./stanExports_MGPCM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from stanExports_MGPCM.cc:5: In file included from ./stanExports_MGPCM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from stanExports_MGPCM.cc:5: In file included from ./stanExports_MGPCM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_MGPCM.cc:5: In file included from ./stanExports_MGPCM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_MGPCM.cc:5: In file included from ./stanExports_MGPCM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from stanExports_MGPCM.cc:5: In file included from ./stanExports_MGPCM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ 15 warnings generated. In file included from stanExports_MGPCM.cc:5: In file included from ./stanExports_MGPCM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:43: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim.hpp:18: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/prob.hpp:290: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable] static constexpr const char* function = "student_t_qf"; ^ In file included from stanExports_MGPCM.cc:5: In file included from ./stanExports_MGPCM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:49: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:16: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob.hpp:7: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable] const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable] const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0); ^ In file included from stanExports_MGPCM.cc:5: In file included from ./stanExports_MGPCM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:54: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/optimize/newton.hpp:98:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = 0; ^ In file included from stanExports_MGPCM.cc:5: In file included from ./stanExports_MGPCM.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = stan::services::error_codes::CONFIG; ^ In file included from stanExports_MGPCM.cc:5: In file included from ./stanExports_MGPCM.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/model_header.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:7: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:520:22: warning: unused variable 'rows' [-Wunused-variable] const Eigen::Index rows = row_idx.ns_.size(); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:521:22: warning: unused variable 'cols' [-Wunused-variable] const Eigen::Index cols = col_idx.ns_.size(); ^ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -falign-functions=64 -Wall -g -O2 -c stanExports_MIRT.cc -o stanExports_MIRT.o In file included from stanExports_MIRT.cc:5: In file included from ./stanExports_MIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from stanExports_MIRT.cc:5: In file included from ./stanExports_MIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from stanExports_MIRT.cc:5: In file included from ./stanExports_MIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_MIRT.cc:5: In file included from ./stanExports_MIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_MIRT.cc:5: In file included from ./stanExports_MIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from stanExports_MIRT.cc:5: In file included from ./stanExports_MIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from stanExports_MIRT.cc:5: In file included from ./stanExports_MIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:43: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim.hpp:18: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/prob.hpp:290: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable] static constexpr const char* function = "student_t_qf"; ^ In file included from stanExports_MIRT.cc:5: In file included from ./stanExports_MIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:49: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:16: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob.hpp:7: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable] const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable] const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0); ^ In file included from stanExports_MIRT.cc:5: In file included from ./stanExports_MIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:54: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/optimize/newton.hpp:98:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = 0; ^ In file included from stanExports_MIRT.cc:5: In file included from ./stanExports_MIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = stan::services::error_codes::CONFIG; ^ In file included from stanExports_MIRT.cc:5: In file included from ./stanExports_MIRT.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/model_header.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:7: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:520:22: warning: unused variable 'rows' [-Wunused-variable] const Eigen::Index rows = row_idx.ns_.size(); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:521:22: warning: unused variable 'cols' [-Wunused-variable] const Eigen::Index cols = col_idx.ns_.size(); ^ 14 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -falign-functions=64 -Wall -g -O2 -c stanExports_TIRT.cc -o stanExports_TIRT.o In file included from stanExports_TIRT.cc:5: In file included from ./stanExports_TIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from stanExports_TIRT.cc:5: In file included from ./stanExports_TIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from stanExports_TIRT.cc:5: In file included from ./stanExports_TIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_TIRT.cc:5: In file included from ./stanExports_TIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:21: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] virtual std::streamsize xsputn(const char_type* s, int n) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/streambuf:291:24: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('std::streamsize' (aka 'long') vs 'int') virtual streamsize xsputn(const char_type* __s, streamsize __n); ^ In file included from stanExports_TIRT.cc:5: In file included from ./stanExports_TIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from stanExports_TIRT.cc:5: In file included from ./stanExports_TIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from stanExports_MIRT.cc:5: In file included from ./stanExports_MIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:49: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:11: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint.hpp:14: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint/lub_constrain.hpp:215:19: warning: lambda capture 'ub' is not used [-Wunused-lambda-capture] [arena_x, ub, lb, ret, lp, diff, inv_logit_x]() mutable { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/constraint/lub_constrain.hpp:403:12: note: in instantiation of function template specialization 'stan::math::lub_constrain, -1, 1, 0>, 0>, int, int, nullptr, nullptr, nullptr>' requested here return lub_constrain(std::forward(x), std::forward(lb), ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/io/deserializer.hpp:434:24: note: in instantiation of function template specialization 'stan::math::lub_constrain, -1, 1, 0>, 0>, const int &, const int &, stan::math::var_value, nullptr>' requested here return stan::math::lub_constrain(this->read(sizes...), lb, ^ ./stanExports_MIRT.h:782:23: note: in instantiation of function template specialization 'stan::io::deserializer>::read_constrain_lub, -1, 1, 0>, true, int, int, stan::math::var_value, int>' requested here in__.template read_constrain_lub< ^ ./stanExports_MIRT.h:1721:12: note: in instantiation of function template specialization 'model_MIRT_namespace::model_MIRT::log_prob_impl>, std::vector, nullptr, nullptr, nullptr>' requested here return log_prob_impl(params_r, params_i, pstream); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_MIRT_namespace::model_MIRT::log_prob>' requested here var adLogProb = model.template log_prob( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/util/initialize.hpp:169:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here log_prob = stan::model::log_prob_grad( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here std::vector cont_vector = util::initialize( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here return_code = stan::services::diagnose::diagnose(model, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here ret = command(args, model_, holder, names_oi_tidx_, ^ stanExports_MIRT.cc:15:73: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here .method("call_sampler", &rstan::stan_fit ::call_sampler) ^ In file included from stanExports_MIRT.cc:5: In file included from ./stanExports_MIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:49: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:11: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint.hpp:14: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint/lub_constrain.hpp:215:23: warning: lambda capture 'lb' is not used [-Wunused-lambda-capture] [arena_x, ub, lb, ret, lp, diff, inv_logit_x]() mutable { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint/lub_constrain.hpp:215:19: warning: lambda capture 'ub' is not used [-Wunused-lambda-capture] [arena_x, ub, lb, ret, lp, diff, inv_logit_x]() mutable { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/constraint/lub_constrain.hpp:403:12: note: in instantiation of function template specialization 'stan::math::lub_constrain, -1, 1, 0>, 0>, double, double, nullptr, nullptr, nullptr>' requested here return lub_constrain(std::forward(x), std::forward(lb), ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/io/deserializer.hpp:434:24: note: in instantiation of function template specialization 'stan::math::lub_constrain, -1, 1, 0>, 0>, const double &, const double &, stan::math::var_value, nullptr>' requested here return stan::math::lub_constrain(this->read(sizes...), lb, ^ ./stanExports_MIRT.h:786:23: note: in instantiation of function template specialization 'stan::io::deserializer>::read_constrain_lub, -1, 1, 0>, true, double, double, stan::math::var_value, int>' requested here in__.template read_constrain_lub< ^ ./stanExports_MIRT.h:1721:12: note: in instantiation of function template specialization 'model_MIRT_namespace::model_MIRT::log_prob_impl>, std::vector, nullptr, nullptr, nullptr>' requested here return log_prob_impl(params_r, params_i, pstream); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_MIRT_namespace::model_MIRT::log_prob>' requested here var adLogProb = model.template log_prob( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/util/initialize.hpp:169:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here log_prob = stan::model::log_prob_grad( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here std::vector cont_vector = util::initialize( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here return_code = stan::services::diagnose::diagnose(model, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here ret = command(args, model_, holder, names_oi_tidx_, ^ stanExports_MIRT.cc:15:73: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here .method("call_sampler", &rstan::stan_fit ::call_sampler) ^ In file included from stanExports_MIRT.cc:5: In file included from ./stanExports_MIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:49: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:11: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint.hpp:14: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint/lub_constrain.hpp:215:23: warning: lambda capture 'lb' is not used [-Wunused-lambda-capture] [arena_x, ub, lb, ret, lp, diff, inv_logit_x]() mutable { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint/lub_constrain.hpp:170:37: warning: lambda capture 'ub' is not used [-Wunused-lambda-capture] reverse_pass_callback([arena_x, ub, lb, ret, diff, inv_logit_x]() mutable { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/constraint/lub_constrain.hpp:406:12: note: in instantiation of function template specialization 'stan::math::lub_constrain, -1, 1, 0>, 0>, int, int, nullptr, nullptr, nullptr>' requested here return lub_constrain(std::forward(x), std::forward(lb), ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/io/deserializer.hpp:434:24: note: in instantiation of function template specialization 'stan::math::lub_constrain, -1, 1, 0>, 0>, const int &, const int &, stan::math::var_value, nullptr>' requested here return stan::math::lub_constrain(this->read(sizes...), lb, ^ ./stanExports_MIRT.h:782:23: note: in instantiation of function template specialization 'stan::io::deserializer>::read_constrain_lub, -1, 1, 0>, false, int, int, stan::math::var_value, int>' requested here in__.template read_constrain_lub< ^ ./stanExports_MIRT.h:1721:12: note: in instantiation of function template specialization 'model_MIRT_namespace::model_MIRT::log_prob_impl>, std::vector, nullptr, nullptr, nullptr>' requested here return log_prob_impl(params_r, params_i, pstream); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_MIRT_namespace::model_MIRT::log_prob>' requested here var adLogProb = model.template log_prob( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/util/initialize.hpp:169:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here log_prob = stan::model::log_prob_grad( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/optimize/newton.hpp:54:25: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here cont_vector = util::initialize(model, init, rng, init_radius, false, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:502:35: note: in instantiation of function template specialization 'stan::services::optimize::newton' requested here = stan::services::optimize::newton(model, *init_context_ptr, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here ret = command(args, model_, holder, names_oi_tidx_, ^ stanExports_MIRT.cc:15:73: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here .method("call_sampler", &rstan::stan_fit ::call_sampler) ^ In file included from stanExports_MIRT.cc:5: In file included from ./stanExports_MIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:49: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:11: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint.hpp:14: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint/lub_constrain.hpp:170:41: warning: lambda capture 'lb' is not used [-Wunused-lambda-capture] reverse_pass_callback([arena_x, ub, lb, ret, diff, inv_logit_x]() mutable { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint/lub_constrain.hpp:170:37: warning: lambda capture 'ub' is not used [-Wunused-lambda-capture] reverse_pass_callback([arena_x, ub, lb, ret, diff, inv_logit_x]() mutable { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/constraint/lub_constrain.hpp:406:12: note: in instantiation of function template specialization 'stan::math::lub_constrain, -1, 1, 0>, 0>, double, double, nullptr, nullptr, nullptr>' requested here return lub_constrain(std::forward(x), std::forward(lb), ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/io/deserializer.hpp:434:24: note: in instantiation of function template specialization 'stan::math::lub_constrain, -1, 1, 0>, 0>, const double &, const double &, stan::math::var_value, nullptr>' requested here return stan::math::lub_constrain(this->read(sizes...), lb, ^ ./stanExports_MIRT.h:786:23: note: in instantiation of function template specialization 'stan::io::deserializer>::read_constrain_lub, -1, 1, 0>, false, double, double, stan::math::var_value, int>' requested here in__.template read_constrain_lub< ^ ./stanExports_MIRT.h:1721:12: note: in instantiation of function template specialization 'model_MIRT_namespace::model_MIRT::log_prob_impl>, std::vector, nullptr, nullptr, nullptr>' requested here return log_prob_impl(params_r, params_i, pstream); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_MIRT_namespace::model_MIRT::log_prob>' requested here var adLogProb = model.template log_prob( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/util/initialize.hpp:169:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here log_prob = stan::model::log_prob_grad( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/optimize/newton.hpp:54:25: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here cont_vector = util::initialize(model, init, rng, init_radius, false, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:502:35: note: in instantiation of function template specialization 'stan::services::optimize::newton' requested here = stan::services::optimize::newton(model, *init_context_ptr, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here ret = command(args, model_, holder, names_oi_tidx_, ^ stanExports_MIRT.cc:15:73: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here .method("call_sampler", &rstan::stan_fit ::call_sampler) ^ In file included from stanExports_MIRT.cc:5: In file included from ./stanExports_MIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:49: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:11: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint.hpp:14: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint/lub_constrain.hpp:170:41: warning: lambda capture 'lb' is not used [-Wunused-lambda-capture] reverse_pass_callback([arena_x, ub, lb, ret, diff, inv_logit_x]() mutable { ^ In file included from stanExports_TIRT.cc:5: In file included from ./stanExports_TIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:43: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim.hpp:18: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/prob.hpp:290: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable] static constexpr const char* function = "student_t_qf"; ^ In file included from stanExports_TIRT.cc:5: In file included from ./stanExports_TIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:49: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:16: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob.hpp:7: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable] const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable] const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0); ^ In file included from stanExports_TIRT.cc:5: In file included from ./stanExports_TIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:54: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/optimize/newton.hpp:98:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = 0; ^ In file included from stanExports_TIRT.cc:5: In file included from ./stanExports_TIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = stan::services::error_codes::CONFIG; ^ In file included from stanExports_TIRT.cc:5: In file included from ./stanExports_TIRT.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/model_header.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:7: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:520:22: warning: unused variable 'rows' [-Wunused-variable] const Eigen::Index rows = row_idx.ns_.size(); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:521:22: warning: unused variable 'cols' [-Wunused-variable] const Eigen::Index cols = col_idx.ns_.size(); ^ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include' -I/opt/R/x86_64/include -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fPIC -falign-functions=64 -Wall -g -O2 -c tools_fast.cpp -o tools_fast.o 18 warnings generated. In file included from stanExports_TIRT.cc:5: In file included from ./stanExports_TIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:49: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:11: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint.hpp:14: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint/lub_constrain.hpp:215:19: warning: lambda capture 'ub' is not used [-Wunused-lambda-capture] [arena_x, ub, lb, ret, lp, diff, inv_logit_x]() mutable { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/constraint/lub_constrain.hpp:403:12: note: in instantiation of function template specialization 'stan::math::lub_constrain, -1, 1, 0>, 0>, double, double, nullptr, nullptr, nullptr>' requested here return lub_constrain(std::forward(x), std::forward(lb), ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/io/deserializer.hpp:434:24: note: in instantiation of function template specialization 'stan::math::lub_constrain, -1, 1, 0>, 0>, const double &, const double &, stan::math::var_value, nullptr>' requested here return stan::math::lub_constrain(this->read(sizes...), lb, ^ ./stanExports_TIRT.h:948:23: note: in instantiation of function template specialization 'stan::io::deserializer>::read_constrain_lub, -1, 1, 0>, true, double, double, stan::math::var_value, int>' requested here in__.template read_constrain_lub< ^ ./stanExports_TIRT.h:1700:12: note: in instantiation of function template specialization 'model_TIRT_namespace::model_TIRT::log_prob_impl>, std::vector, nullptr, nullptr, nullptr>' requested here return log_prob_impl(params_r, params_i, pstream); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_TIRT_namespace::model_TIRT::log_prob>' requested here var adLogProb = model.template log_prob( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/util/initialize.hpp:169:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here log_prob = stan::model::log_prob_grad( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:49:43: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here std::vector cont_vector = util::initialize( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:481:45: note: in instantiation of function template specialization 'stan::services::diagnose::diagnose' requested here return_code = stan::services::diagnose::diagnose(model, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here ret = command(args, model_, holder, names_oi_tidx_, ^ stanExports_TIRT.cc:15:73: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here .method("call_sampler", &rstan::stan_fit ::call_sampler) ^ In file included from stanExports_TIRT.cc:5: In file included from ./stanExports_TIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:49: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:11: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint.hpp:14: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint/lub_constrain.hpp:215:23: warning: lambda capture 'lb' is not used [-Wunused-lambda-capture] [arena_x, ub, lb, ret, lp, diff, inv_logit_x]() mutable { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint/lub_constrain.hpp:170:37: warning: lambda capture 'ub' is not used [-Wunused-lambda-capture] reverse_pass_callback([arena_x, ub, lb, ret, diff, inv_logit_x]() mutable { ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/constraint/lub_constrain.hpp:406:12: note: in instantiation of function template specialization 'stan::math::lub_constrain, -1, 1, 0>, 0>, double, double, nullptr, nullptr, nullptr>' requested here return lub_constrain(std::forward(x), std::forward(lb), ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/io/deserializer.hpp:434:24: note: in instantiation of function template specialization 'stan::math::lub_constrain, -1, 1, 0>, 0>, const double &, const double &, stan::math::var_value, nullptr>' requested here return stan::math::lub_constrain(this->read(sizes...), lb, ^ ./stanExports_TIRT.h:948:23: note: in instantiation of function template specialization 'stan::io::deserializer>::read_constrain_lub, -1, 1, 0>, false, double, double, stan::math::var_value, int>' requested here in__.template read_constrain_lub< ^ ./stanExports_TIRT.h:1700:12: note: in instantiation of function template specialization 'model_TIRT_namespace::model_TIRT::log_prob_impl>, std::vector, nullptr, nullptr, nullptr>' requested here return log_prob_impl(params_r, params_i, pstream); ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:40:36: note: in instantiation of function template specialization 'model_TIRT_namespace::model_TIRT::log_prob>' requested here var adLogProb = model.template log_prob( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/util/initialize.hpp:169:31: note: in instantiation of function template specialization 'stan::model::log_prob_grad' requested here log_prob = stan::model::log_prob_grad( ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/optimize/newton.hpp:54:25: note: in instantiation of function template specialization 'stan::services::util::initialize, boost::random::linear_congruential_engine>>' requested here cont_vector = util::initialize(model, init, rng, init_radius, false, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:502:35: note: in instantiation of function template specialization 'stan::services::optimize::newton' requested here = stan::services::optimize::newton(model, *init_context_ptr, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:1215:11: note: in instantiation of function template specialization 'rstan::(anonymous namespace)::command, boost::random::linear_congruential_engine>>' requested here ret = command(args, model_, holder, names_oi_tidx_, ^ stanExports_TIRT.cc:15:73: note: in instantiation of member function 'rstan::stan_fit, boost::random::linear_congruential_engine>>::call_sampler' requested here .method("call_sampler", &rstan::stan_fit ::call_sampler) ^ In file included from stanExports_TIRT.cc:5: In file included from ./stanExports_TIRT.h:23: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/rstan/include/rstan/stan_fit.hpp:49: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:8: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:11: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint.hpp:14: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/constraint/lub_constrain.hpp:170:41: warning: lambda capture 'lb' is not used [-Wunused-lambda-capture] reverse_pass_callback([arena_x, ub, lb, ret, diff, inv_logit_x]() mutable { ^ 14 warnings generated. 14 warnings generated. 22 warnings generated. 18 warnings generated. clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o ForceChoice.so RcppExports.o fcggum_istem_fast.o gibbs_theta_fast.o gibbs_tirt.o gof_fast.o item_loglik.o model_prob_fast.o stanExports_FCDCM.o stanExports_FCGDINA.o stanExports_FCGGUM.o stanExports_FCMIRT.o stanExports_MGGUM.o stanExports_MGPCM.o stanExports_MIRT.o stanExports_TIRT.o tools_fast.o -L/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/lib -Wl,-rpath,/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/lib -ltbb -ltbbmalloc -L/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/lib/ -Wl,-rpath,/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/lib/ -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.5/ForceChoice.Rcheck/00LOCK-ForceChoice/00new/ForceChoice/libs ** generating debug symbols (dSYM) ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ForceChoice)