• using R version 4.4.1 (2024-06-14)
  • using platform: x86_64-apple-darwin20
  • R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 12.2.0
  • running under: macOS Ventura 13.3.1
  • using session charset: UTF-8
  • checking for file ‘DSMolgenisArmadillo/DESCRIPTION’ ... OK
  • checking extension type ... Package
  • this is package ‘DSMolgenisArmadillo’ version ‘3.0.0’
  • package encoding: UTF-8
  • checking package namespace information ... OK
  • checking package dependencies ... NOTE Package suggested but not available for checking: ‘dsBaseClient’
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
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  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking whether package ‘DSMolgenisArmadillo’ can be installed ... [4s/5s] OK See the install log for details.
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking ‘build’ directory ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
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  • checking code files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... [1s/1s] OK
  • checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
  • checking whether the package can be unloaded cleanly ... [1s/1s] OK
  • checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
  • checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
  • checking loading without being on the library search path ... [1s/1s] OK
  • checking dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
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  • checking R code for possible problems ... [3s/4s] OK
  • checking Rd files ... [0s/0s] OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking installed files from ‘inst/doc’ ... OK
  • checking files in ‘vignettes’ ... OK
  • checking examples ... [1s/1s] OK
  • checking for unstated dependencies in ‘tests’ ... OK
  • checking tests ... [40s/56s] ERROR   Running ‘testthat.R’ [40s/56s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(DSMolgenisArmadillo)   Loading required package: DSI   Loading required package: progress   Loading required package: R6   Loading required package: MolgenisAuth   > library(tibble)   >   > test_check("DSMolgenisArmadillo")   An object of class "ArmadilloCredentials"   Slot "access_token":   [1] "access456"      Slot "expires_in":   [1] 300      Slot "expires_at":   [1] "2025-08-09 19:35:01 EDT"      Slot "id_token":   [1] "id123"      Slot "refresh_token":   [1] "refresh123"      Slot "token_type":   [1] "Bearer"      Slot "auth_type":   [1] "keycloak"      [ FAIL 2 | WARN 2 | SKIP 1 | PASS 396 ]      ══ Skipped tests (1) ═══════════════════════════════════════════════════════════   • I still don't get the .deparse arguments (1): 'test-utils.R:91:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-ArmadilloOAuth.R:86:3'): .refresh_token returns success message if new credentials are not null and option fusionauth ──   DSMolgenisArmadillo:::.refresh_token(server, credentials_in) not equal to `credentials_out`.   Attributes: < Component "expires_in": Mean relative difference: 0.31444 >   ── Failure ('test-ArmadilloOAuth.R:143:3'): .refresh_token returns success message if new credentials are not null and option keycloak ──   DSMolgenisArmadillo:::.refresh_token(server, credentials_in) not equal to `credentials_out`.   Attributes: < Component "expires_at": Mean absolute difference: 1.007468 >      [ FAIL 2 | WARN 2 | SKIP 1 | PASS 396 ]   Error: Test failures   Execution halted
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes ... OK
  • checking re-building of vignette outputs ... [14s/19s] OK
  • checking PDF version of manual ... [6s/7s] OK
  • DONE Status: 1 ERROR, 1 NOTE
  • using check arguments '--no-clean-on-error '