* installing *source* package ‘BDgraph’ ...
** package ‘BDgraph’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using C++11
using SDK: ‘MacOSX11.3.sdk’
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BDgraph_init.c -o BDgraph_init.o
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c copula.cpp -o copula.o
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c gcgm_DMH.cpp -o gcgm_DMH.o
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c gcgm_bd.cpp -o gcgm_bd.o
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c gcgm_dw_bd.cpp -o gcgm_dw_bd.o
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ggm_DMH.cpp -o ggm_DMH.o
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ggm_bd.cpp -o ggm_bd.o
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ggm_mpl_bd.cpp -o ggm_mpl_bd.o
ggm_mpl_bd.cpp:363:9: warning: variable 'sum_weights' set but not used [-Wunused-but-set-variable]
double sum_weights = 0.0, weight_C, sum_rates;
^
ggm_mpl_bd.cpp:703:9: warning: variable 'sum_weights' set but not used [-Wunused-but-set-variable]
double sum_weights = 0.0, weight_C, sum_rates;
^
2 warnings generated.
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c gm_mpl_Hill_Climb.cpp -o gm_mpl_Hill_Climb.o
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c gm_mpl_bd_dis.cpp -o gm_mpl_bd_dis.o
gm_mpl_bd_dis.cpp:725:9: warning: variable 'sum_weights' set but not used [-Wunused-but-set-variable]
double sum_weights = 0.0, weight_C, sum_rates;
^
gm_mpl_bd_dis.cpp:1089:9: warning: variable 'sum_weights' set but not used [-Wunused-but-set-variable]
double sum_weights = 0.0, weight_C, sum_rates;
^
gm_mpl_bd_dis.cpp:1621:9: warning: variable 'sum_weights' set but not used [-Wunused-but-set-variable]
double sum_weights = 0.0, weight_C, sum_rates;
^
gm_mpl_bd_dis.cpp:1947:9: warning: variable 'sum_weights' set but not used [-Wunused-but-set-variable]
double sum_weights = 0.0, weight_C, sum_rates;
^
4 warnings generated.
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c gm_rj.cpp -o gm_rj.o
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c matrix.cpp -o matrix.o
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c omp_set_num_cores.cpp -o omp_set_num_cores.o
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rgwish.cpp -o rgwish.o
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c tgm_bd.cpp -o tgm_bd.o
clang++ -arch x86_64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o BDgraph.so BDgraph_init.o copula.o gcgm_DMH.o gcgm_bd.o gcgm_dw_bd.o ggm_DMH.o ggm_bd.o ggm_mpl_bd.o gm_mpl_Hill_Climb.o gm_mpl_bd_dis.o gm_rj.o matrix.o omp_set_num_cores.o rgwish.o tgm_bd.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.3/BDgraph.Rcheck/00LOCK-BDgraph/00new/BDgraph/libs
** generating debug symbols (dSYM)
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BDgraph)