* using log directory ‘/Volumes/Builds/packages/big-sur-x86_64/results/4.3/APCalign.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: x86_64-apple-darwin20 (64-bit)
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.3.1
* using session charset: UTF-8
* checking for file ‘APCalign/DESCRIPTION’ ... OK
* this is package ‘APCalign’ version ‘1.0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘APCalign’ can be installed ... [4s/8s] OK
See 'https://www.r-project.org/nosvn/R.check/r-oldrel-macos-x86_64/APCalign-00install.html' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [4s/6s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [1s/1s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [1s/2s] ERROR
  Running ‘testthat.R’ [1s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
   20. │                               │   ├─assertthat::assert_that(inherits(object, class), msg = msg)
   21. │                               │   │ └─assertthat::see_if(..., env = env, msg = msg)
   22. │                               │   │   ├─base::tryCatch(...)
   23. │                               │   │   │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   24. │                               │   │   │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   25. │                               │   │   │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
   26. │                               │   │   └─base::eval(assertion, env)
   27. │                               │   │     └─base::eval(assertion, env)
   28. │                               │   └─base::inherits(object, class)
   29. │                               └─ParquetArrowReaderProperties$create()
   30. │                                 └─arrow:::parquet___arrow___ArrowReaderProperties__Make(isTRUE(use_threads))
   31. └─base::.handleSimpleError(...)
   32.   └─testthat (local) h(simpleError(msg, call))
   33.     └─rlang::abort(...)
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... [1s/2s] ERROR
Errors in running code in vignettes:
when running code in ‘updating-taxon-names.Rmd’
  ...
+         bootstrap_options = c(" ..." ... [TRUNCATED] 

> my_kable_styling <- util_kable_styling_html

> match_taxa_documentation <- readr::read_csv(here("inst", 
+     "extdata", "match_taxa_documentation.csv"), show_col_types = FALSE)

  When sourcing ‘updating-taxon-names.R’:
Error: '/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/RtmpoFZt2l/file54123f70fec5/vignettes/inst/extdata/match_taxa_documentation.csv' does not exist.
Execution halted

  ‘APCalign.Rmd’ using ‘UTF-8’... [0s/0s] OK
  ‘updating-taxon-names.Rmd’ using ‘UTF-8’... failed
* checking re-building of vignette outputs ... [12s/19s] OK
* checking PDF version of manual ... [6s/9s] OK
* DONE
Status: 2 ERRORs
* using check arguments '--no-clean-on-error '

* elapsed time (check, wall clock): 1:17