- using R version 4.5.2 Patched (2026-01-31 r89382)
- using platform: aarch64-apple-darwin20
- R was compiled by
Apple clang version 16.0.0 (clang-1600.0.26.6)
GNU Fortran (GCC) 14.2.0
- running under: macOS Ventura 13.7.8
- using session charset: UTF-8
- checking for file ‘visStatistics/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘visStatistics’ version ‘0.3.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘visStatistics’ can be installed ... [1s/2s] OK
See the install log for details.
- checking installed package size ... INFO
installed size is 8.5Mb
sub-directories of 1Mb or more:
doc 5.0Mb
help 2.8Mb
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
- checking loading without being on the library search path ... [0s/0s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [2s/2s] OK
- checking Rd files ... [0s/0s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [9s/11s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [82s/82s] ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [82s/82s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # tests/testthat.R
> library(testthat)
> library(visStatistics)
>
> test_check("visStatistics")
Object of class 'visstat'
Available components:
[1] "Kruskal Wallis rank sum test"
[2] "post-hoc by pairwise Wilcoxon rank sum test "
[3] "effect_size"
Object of class 'visstat'
Available components:
[1] "Kruskal Wallis rank sum test"
[2] "post-hoc by pairwise Wilcoxon rank sum test "
[3] "effect_size"
Object of class 'visstat'
Available components:
[1] "Kruskal Wallis rank sum test"
[2] "post-hoc by pairwise Wilcoxon rank sum test "
[3] "effect_size"
Object of class 'visstat'
Available components:
[1] "Kruskal Wallis rank sum test"
[2] "post-hoc by pairwise Wilcoxon rank sum test "
[3] "effect_size"
Object of class 'visstat'
Available components:
[1] "Kruskal Wallis rank sum test"
[2] "post-hoc by pairwise Wilcoxon rank sum test "
[3] "effect_size"
Object of class 'visstat'
Available components:
[1] "Kruskal Wallis rank sum test"
[2] "post-hoc by pairwise Wilcoxon rank sum test "
[3] "effect_size"
=== Testing Optional Cairo Backends ===
--- Testing tiff backend ---
Creating tiff device...
Plotting to tiff device...
Closing tiff device...
Expected file: /Volumes/Temp/tmp/RtmpfbbSVX/format_test.tiff
SUCCESS: tiff file created with size 12916 bytes
Cleaned up tiff file
--- Testing svg backend ---
Creating svg device...
Plotting to svg device...
Closing svg device...
Expected file: /Volumes/Temp/tmp/RtmpfbbSVX/format_test.svg
SUCCESS: svg file created with size 24212 bytes
Cleaned up svg file
--- Testing ps backend ---
Creating ps device...
Plotting to ps device...
Closing ps device...
Expected file: /Volumes/Temp/tmp/RtmpfbbSVX/format_test.ps
SUCCESS: ps file created with size 33689 bytes
Cleaned up ps file
=== Backend Test Summary ===
WORKING backends: tiff, svg, ps
Loading required package: grid
2026-08-05 16:10:23.203 R[32887:201700] XType: Using static font registry.
Plot [2] captured. Use plot(obj, which = 2) to display.
Object of class 'visstat'
Available components:
NULL
Summary of visstat object
--- Named components ---
NULL
--- Contents ---
Object of class 'visstat'
p-value: 0.05
Available components:
[1] "test"
Summary of visstat object
--- Named components ---
[1] "test"
--- Contents ---
$test:
$p.value
[1] 0.05
Object of class 'visstat'
Available components:
[1] "data"
Summary of visstat object
--- Named components ---
[1] "data"
--- Contents ---
$data:
[1] "some data"
Object of class 'visstat'
Test used: One-way ANOVA
p-value: 0.0234
Available components:
[1] "test" "assumptions" "effect_size"
Summary of visstat object
--- Named components ---
[1] "test" "assumptions" "effect_size"
--- Contents ---
$test:
$method
[1] "One-way ANOVA"
$p.value
[1] 0.0234
$statistic
[1] 4.567
$data.name
[1] "test data"
$assumptions:
$normality
$normality$method
[1] "Shapiro-Wilk"
$normality$p.value
[1] 0.123
$homogeneity
$homogeneity$method
[1] "Levene's Test"
$homogeneity$p.value
[1] 0.456
$effect_size:
$name
[1] "omega-squared"
$estimate
[1] 0.12
$effect_size_method
[1] "Omega-squared for one-way ANOVA"
Plot [1] stored in /Volumes/Temp/tmp/RtmpfbbSVX/glm_assumptions_numeric_x_factor_2_levels.png
Plot [2] stored in /Volumes/Temp/tmp/RtmpfbbSVX/ttest_numeric_x_factor_2_levels.png
Plot [1] stored in /Volumes/Temp/tmp/RtmpfbbSVX/glm_assumptions_custom_test.png
Plot [2] stored in /Volumes/Temp/tmp/RtmpfbbSVX/custom_test.png
Object of class 'visstat'
Available components:
[1] "dependent variable (response)" "independent variables (features)"
[3] "t-test-statistics" "Shapiro-Wilk-test_sample1"
[5] "Shapiro-Wilk-test_sample2" "effect_size"
Summary of visstat object
--- Named components ---
[1] "dependent variable (response)" "independent variables (features)"
[3] "t-test-statistics" "Shapiro-Wilk-test_sample1"
[5] "Shapiro-Wilk-test_sample2" "effect_size"
--- Contents ---
$dependent variable (response):
[1] "numeric_x"
$independent variables (features):
[1] Group1 Group2
Levels: Group1 Group2
$t-test-statistics:
Two Sample t-test
data: x1 and x2
t = 1.8931, df = 28, p-value = 0.06873
alternative hypothesis: true difference in means is not equal to 0
95 percent confidence interval:
-0.1364339 3.4616123
sample estimates:
mean of x mean of y
10.968468 9.305879
$Shapiro-Wilk-test_sample1:
Shapiro-Wilk normality test
data: x
W = 0.9564, p-value = 0.6302
$Shapiro-Wilk-test_sample2:
Shapiro-Wilk normality test
data: x
W = 0.95394, p-value = 0.5884
$effect_size:
$name
[1] "Hedges' g"
$estimate
[1] 0.6725373
$effect_size_method
[1] "Hedges' g using pooled standard deviation"
Plot [1] captured. Use plot(obj, which = 1) to display.
Plot [2] captured. Use plot(obj, which = 2) to display.
Object of class 'visstat'
Available components:
[1] "dependent variable (response)" "independent variables (features)"
[3] "t-test-statistics" "Shapiro-Wilk-test_sample1"
[5] "Shapiro-Wilk-test_sample2" "effect_size"
Summary of visstat object
--- Named components ---
[1] "dependent variable (response)" "independent variables (features)"
[3] "t-test-statistics" "Shapiro-Wilk-test_sample1"
[5] "Shapiro-Wilk-test_sample2" "effect_size"
--- Contents ---
$dependent variable (response):
[1] "numeric_x"
$independent variables (features):
[1] Group1 Group2
Levels: Group1 Group2
$t-test-statistics:
Two Sample t-test
data: x1 and x2
t = 1.8931, df = 28, p-value = 0.06873
alternative hypothesis: true difference in means is not equal to 0
95 percent confidence interval:
-0.1364339 3.4616123
sample estimates:
mean of x mean of y
10.968468 9.305879
$Shapiro-Wilk-test_sample1:
Shapiro-Wilk normality test
data: x
W = 0.9564, p-value = 0.6302
$Shapiro-Wilk-test_sample2:
Shapiro-Wilk normality test
data: x
W = 0.95394, p-value = 0.5884
$effect_size:
$name
[1] "Hedges' g"
$estimate
[1] 0.6725373
$effect_size_method
[1] "Hedges' g using pooled standard deviation"
Plot [1] captured. Use plot(obj, which = 1) to display.
Plot [2] captured. Use plot(obj, which = 2) to display.
RECOMMENDATION: Consider exploring alternatives outside visstat() such as data transformations,
generalised linear models, or robust regression. For a non-causal alternative
consider rerunning with correlation = TRUE.
RECOMMENDATION: Consider exploring alternatives outside visstat() such as data transformations,
generalised linear models, or robust regression. For a non-causal alternative
consider rerunning with correlation = TRUE.
Saving _problems/test-visstat-750.R
Saving _problems/test-visstat-759.R
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 568 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-test_and_visuals.R:449:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-visstat.R:750:5'): correlation request is only valid for rank-correlation routes ──
Expected `case$method(caught$value)` to match regexp "Wilcoxon rank sum exact test".
Actual text:
x | Wilcoxon rank sum test with continuity correction
── Failure ('test-visstat.R:756:7'): correlation request is only valid for rank-correlation routes ──
Expected `any(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 568 ]
Error:
! Test failures.
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [11s/11s] OK
- checking PDF version of manual ... [2s/2s] OK
- DONE
Status: 1 ERROR