Check results for 'tipmap'

using R version 4.5.2 Patched (2026-01-31 r89382)
using platform: aarch64-apple-darwin20
R was compiled by Apple clang version 16.0.0 (clang-1600.0.26.6) GNU Fortran (GCC) 14.2.0
running under: macOS Ventura 13.7.8
using session charset: UTF-8
checking for file ‘tipmap/DESCRIPTION’ ... OK
checking extension type ... Package
this is package ‘tipmap’ version ‘1.0.0’
package encoding: UTF-8
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘tipmap’ can be installed ... [1s/1s] OK See the install log for details.
checking installed package size ... OK
checking package directory ... OK
checking ‘build’ directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking code files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [0s/0s] OK
checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
checking whether the package can be unloaded cleanly ... [0s/0s] OK
checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
checking loading without being on the library search path ... [0s/0s] OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
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checking R code for possible problems ... [1s/1s] OK
checking Rd files ... [0s/0s] OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking installed files from ‘inst/doc’ ... OK
checking files in ‘vignettes’ ... OK
checking examples ... [2s/2s] ERROR Running examples in ‘tipmap-Ex.R’ failed The error most likely occurred in: > ### Name: draw_beta_mixture_nsamples > ### Title: Draw samples from a mixture of beta distributions > ### Aliases: draw_beta_mixture_nsamples > > ### ** Examples > > rweights <- draw_beta_mixture_nsamples( + n = 50, + chips_mult = rbind( + c(0, 0, 0, 0, 2, 3, 3, 2, 0, 0), + c(0, 0, 0, 1, 2, 4, 2, 1, 0, 0), + c(0, 0, 0, 2, 2, 2, 2, 2, 0, 0) + ), + expert_weight = rep(1/3, 3) + ) Error in `purrr::map()`: ℹ In index: 2. Caused by error: ! `cum_probs` must lie in [0, 1] Backtrace: ▆ 1. ├─tipmap::draw_beta_mixture_nsamples(...) 2. │ └─tipmap::fit_beta_mult_exp(chips_mult) 3. │ └─purrr::map(.x = chips_rows, .f = ~get_model_input_1exp(cum_probs = get_cum_probs_1exp(.x))) 4. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress) 5. │ ├─purrr:::with_indexed_errors(...) 6. │ │ └─base::withCallingHandlers(...) 7. │ ├─purrr:::call_with_cleanup(...) 8. │ └─tipmap (local) .f(.x[[i]], ...) 9. │ └─tipmap::get_model_input_1exp(cum_probs = get_cum_probs_1exp(.x)) 10. │ └─assertthat::assert_that(...) 11. │ └─base::stop(assertError(attr(res, "msg"))) 12. └─purrr (local) `<fn>`(`<assrtErr>`) 13. └─cli::cli_abort(...) 14. └─rlang::abort(...) Execution halted
checking for unstated dependencies in ‘tests’ ... OK
checking tests ... [4s/4s] ERROR Running ‘testthat.R’ [4s/4s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(tipmap) > > test_check("tipmap") Saving _problems/test-draw_beta_mixture_nsamples-9.R Saving _problems/test-draw_beta_mixture_nsamples-24.R Saving _problems/test-fit_beta_mult_exp-8.R Saving _problems/test-get_summary_mult_exp-9.R Saving _problems/test-get_summary_mult_exp-41.R Treatment effect in target population without borrowing Treatment effect in target population without borrowing 95% credible interval for MAP prior includes null treatment effect 95% credible interval for MAP prior includes null treatment effect Treatment effect in target population without borrowing Treatment effect in target population without borrowing Treatment effect in target population without borrowing Weight 0 identified for tipping point of quantile 0.025 Weight 0 identified for tipping point of quantile 0.05 Weight 0 identified for tipping point of quantile 0.1 Weight 0 identified for tipping point of quantile 0.2 Treatment effect in target population without borrowing 95% credible interval for MAP prior includes null treatment effect [ FAIL 5 | WARN 2 | SKIP 0 | PASS 185 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-draw_beta_mixture_nsamples.R:9:3'): draw_beta_mixture_nsamples returns values in [0, 1] ── <purrr_error_indexed/rlang_error/error/condition> Error in `purrr::map(.x = chips_rows, .f = ~get_model_input_1exp(cum_probs = get_cum_probs_1exp(.x)))`: i In index: 2. Caused by error: ! `cum_probs` must lie in [0, 1] Backtrace: ▆ 1. ├─tipmap::draw_beta_mixture_nsamples(n = 50, chips_mult = chips_mult) at test-draw_beta_mixture_nsamples.R:9:3 2. │ └─tipmap::fit_beta_mult_exp(chips_mult) 3. │ └─purrr::map(.x = chips_rows, .f = ~get_model_input_1exp(cum_probs = get_cum_probs_1exp(.x))) 4. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress) 5. │ ├─purrr:::with_indexed_errors(...) 6. │ │ └─base::withCallingHandlers(...) 7. │ ├─purrr:::call_with_cleanup(...) 8. │ └─tipmap (local) .f(.x[[i]], ...) 9. │ └─tipmap::get_model_input_1exp(cum_probs = get_cum_probs_1exp(.x)) 10. │ └─assertthat::assert_that(...) 11. │ └─base::stop(assertError(attr(res, "msg"))) 12. └─purrr (local) `<fn>`(`<assrtErr>`) 13. └─cli::cli_abort(...) 14. └─rlang::abort(...) ── Error ('test-draw_beta_mixture_nsamples.R:24:3'): draw_beta_mixture_nsamples is reproducible under set.seed ── <purrr_error_indexed/rlang_error/error/condition> Error in `purrr::map(.x = chips_rows, .f = ~get_model_input_1exp(cum_probs = get_cum_probs_1exp(.x)))`: i In index: 2. Caused by error: ! `cum_probs` must lie in [0, 1] Backtrace: ▆ 1. ├─tipmap::draw_beta_mixture_nsamples(n = 10, chips_mult = chips_mult) at test-draw_beta_mixture_nsamples.R:24:3 2. │ └─tipmap::fit_beta_mult_exp(chips_mult) 3. │ └─purrr::map(.x = chips_rows, .f = ~get_model_input_1exp(cum_probs = get_cum_probs_1exp(.x))) 4. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress) 5. │ ├─purrr:::with_indexed_errors(...) 6. │ │ └─base::withCallingHandlers(...) 7. │ ├─purrr:::call_with_cleanup(...) 8. │ └─tipmap (local) .f(.x[[i]], ...) 9. │ └─tipmap::get_model_input_1exp(cum_probs = get_cum_probs_1exp(.x)) 10. │ └─assertthat::assert_that(...) 11. │ └─base::stop(assertError(attr(res, "msg"))) 12. └─purrr (local) `<fn>`(`<assrtErr>`) 13. └─cli::cli_abort(...) 14. └─rlang::abort(...) ── Error ('test-fit_beta_mult_exp.R:8:3'): fit_beta_mult_exp returns one row per expert ── <purrr_error_indexed/rlang_error/error/condition> Error in `purrr::map(.x = chips_rows, .f = ~get_model_input_1exp(cum_probs = get_cum_probs_1exp(.x)))`: i In index: 2. Caused by error: ! `cum_probs` must lie in [0, 1] Backtrace: ▆ 1. ├─tipmap::fit_beta_mult_exp(chips_mult) at test-fit_beta_mult_exp.R:8:3 2. │ └─purrr::map(.x = chips_rows, .f = ~get_model_input_1exp(cum_probs = get_cum_probs_1exp(.x))) 3. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress) 4. │ ├─purrr:::with_indexed_errors(...) 5. │ │ └─base::withCallingHandlers(...) 6. │ ├─purrr:::call_with_cleanup(...) 7. │ └─tipmap (local) .f(.x[[i]], ...) 8. │ └─tipmap::get_model_input_1exp(cum_probs = get_cum_probs_1exp(.x)) 9. │ └─assertthat::assert_that(...) 10. │ └─base::stop(assertError(attr(res, "msg"))) 11. └─purrr (local) `<fn>`(`<assrtErr>`) 12. └─cli::cli_abort(...) 13. └─rlang::abort(...) ── Error ('test-get_summary_mult_exp.R:9:3'): get_summary_mult_exp returns summary statistics ── <purrr_error_indexed/rlang_error/error/condition> Error in `purrr::map(.x = chips_rows, .f = ~get_model_input_1exp(cum_probs = get_cum_probs_1exp(.x)))`: i In index: 2. Caused by error: ! `cum_probs` must lie in [0, 1] Backtrace: ▆ 1. ├─tipmap::get_summary_mult_exp(chips_mult = chips_mult, n = 50) at test-get_summary_mult_exp.R:9:3 2. │ └─tipmap::draw_beta_mixture_nsamples(...) 3. │ └─tipmap::fit_beta_mult_exp(chips_mult) 4. │ └─purrr::map(.x = chips_rows, .f = ~get_model_input_1exp(cum_probs = get_cum_probs_1exp(.x))) 5. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress) 6. │ ├─purrr:::with_indexed_errors(...) 7. │ │ └─base::withCallingHandlers(...) 8. │ ├─purrr:::call_with_cleanup(...) 9. │ └─tipmap (local) .f(.x[[i]], ...) 10. │ └─tipmap::get_model_input_1exp(cum_probs = get_cum_probs_1exp(.x)) 11. │ └─assertthat::assert_that(...) 12. │ └─base::stop(assertError(attr(res, "msg"))) 13. └─purrr (local) `<fn>`(`<assrtErr>`) 14. └─cli::cli_abort(...) 15. └─rlang::abort(...) ── Error ('test-get_summary_mult_exp.R:37:3'): get_summary_mult_exp works with custom expert weights ── <purrr_error_indexed/rlang_error/error/condition> Error in `purrr::map(.x = chips_rows, .f = ~get_model_input_1exp(cum_probs = get_cum_probs_1exp(.x)))`: i In index: 2. Caused by error: ! `cum_probs` must lie in [0, 1] Backtrace: ▆ 1. ├─tipmap::get_summary_mult_exp(...) at test-get_summary_mult_exp.R:37:3 2. │ └─tipmap::draw_beta_mixture_nsamples(...) 3. │ └─tipmap::fit_beta_mult_exp(chips_mult) 4. │ └─purrr::map(.x = chips_rows, .f = ~get_model_input_1exp(cum_probs = get_cum_probs_1exp(.x))) 5. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress) 6. │ ├─purrr:::with_indexed_errors(...) 7. │ │ └─base::withCallingHandlers(...) 8. │ ├─purrr:::call_with_cleanup(...) 9. │ └─tipmap (local) .f(.x[[i]], ...) 10. │ └─tipmap::get_model_input_1exp(cum_probs = get_cum_probs_1exp(.x)) 11. │ └─assertthat::assert_that(...) 12. │ └─base::stop(assertError(attr(res, "msg"))) 13. └─purrr (local) `<fn>`(`<assrtErr>`) 14. └─cli::cli_abort(...) 15. └─rlang::abort(...) [ FAIL 5 | WARN 2 | SKIP 0 | PASS 185 ] Error: ! Test failures. Execution halted
checking for unstated dependencies in vignettes ... OK
checking package vignettes ... OK
checking re-building of vignette outputs ... [11s/10s] OK
checking PDF version of manual ... [2s/2s] OK
DONE Status: 2 ERRORs
using check arguments '--no-clean-on-error '