• using R version 4.2.0 (2022-04-22)
  • using platform: aarch64-apple-darwin20 (64-bit)
  • using session charset: UTF-8
  • checking for file ‘survival/DESCRIPTION’ ... OK
  • this is package ‘survival’ version ‘3.5-7’
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking for hidden files and directories ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking whether package ‘survival’ can be installed ... [22s/26s] OK
    See the install log for details.
  • checking installed package size ... NOTE
      installed size is 9.8Mb
      sub-directories of 1Mb or more:
        R 2.1Mb
        data 2.3Mb
        doc 3.9Mb
  • checking package directory ... OK
  • checking ‘build’ directory ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking for left-over files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... [15s/16s] OK
  • checking Rd files ... [1s/1s] OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of ‘data’ directory ... OK
  • checking data for non-ASCII characters ... OK
  • checking LazyData ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking line endings in C/C++/Fortran sources/headers ... OK
  • checking line endings in Makefiles ... OK
  • checking for GNU extensions in Makefiles ... OK
  • checking include directives in Makefiles ... OK
  • checking compiled code ... OK
  • checking sizes of PDF files under ‘inst/doc’ ... OK
  • checking installed files from ‘inst/doc’ ... OK
  • checking files in ‘vignettes’ ... OK
  • checking examples ... [4s/4s] OK
  • checking differences from ‘survival-Ex.Rout’ to ‘survival-Ex.Rout.save’ ... OK
  • checking for unstated dependencies in ‘tests’ ... OK
  • checking tests ... [92s/99s] OK
      Running ‘aareg.R’ [1s/1s]
      Comparing ‘aareg.Rout’ to ‘aareg.Rout.save’ ... OK
      Running ‘anova.R’ [1s/1s]
      Comparing ‘anova.Rout’ to ‘anova.Rout.save’ ... OK
      Running ‘bladder.R’ [1s/1s]
      Comparing ‘bladder.Rout’ to ‘bladder.Rout.save’ ... OK
      Running ‘book1.R’ [1s/1s]
      Comparing ‘book1.Rout’ to ‘book1.Rout.save’ ... OK
      Running ‘book2.R’ [1s/1s]
      Comparing ‘book2.Rout’ to ‘book2.Rout.save’ ... OK
      Running ‘book3.R’ [1s/1s]
      Comparing ‘book3.Rout’ to ‘book3.Rout.save’ ... OK
      Running ‘book4.R’ [1s/1s]
      Comparing ‘book4.Rout’ to ‘book4.Rout.save’ ... OK
      Running ‘book5.R’ [1s/1s]
      Comparing ‘book5.Rout’ to ‘book5.Rout.save’ ... OK
      Running ‘book6.R’ [1s/1s]
      Comparing ‘book6.Rout’ to ‘book6.Rout.save’ ... OK
      Running ‘book7.R’ [1s/1s]
      Comparing ‘book7.Rout’ to ‘book7.Rout.save’ ... OK
      Running ‘brier.R’ [6s/6s]
      Comparing ‘brier.Rout’ to ‘brier.Rout.save’ ... OK
      Running ‘cancer.R’ [1s/1s]
      Comparing ‘cancer.Rout’ to ‘cancer.Rout.save’ ... OK
      Running ‘checkSurv2.R’ [1s/1s]
      Comparing ‘checkSurv2.Rout’ to ‘checkSurv2.Rout.save’ ... OK
      Running ‘clogit.R’ [1s/1s]
      Comparing ‘clogit.Rout’ to ‘clogit.Rout.save’ ... OK
      Running ‘concordance.R’ [1s/1s]
      Comparing ‘concordance.Rout’ to ‘concordance.Rout.save’ ... OK
      Running ‘concordance2.R’ [2s/2s]
      Comparing ‘concordance2.Rout’ to ‘concordance2.Rout.save’ ... OK
      Running ‘concordance3.R’ [1s/1s]
      Comparing ‘concordance3.Rout’ to ‘concordance3.Rout.save’ ... OK
      Running ‘counting.R’ [1s/1s]
      Comparing ‘counting.Rout’ to ‘counting.Rout.save’ ... OK
      Running ‘coxsurv.R’ [1s/1s]
      Comparing ‘coxsurv.Rout’ to ‘coxsurv.Rout.save’ ... OK
      Running ‘coxsurv2.R’ [1s/1s]
      Comparing ‘coxsurv2.Rout’ to ‘coxsurv2.Rout.save’ ... OK
      Running ‘coxsurv3.R’ [1s/1s]
      Comparing ‘coxsurv3.Rout’ to ‘coxsurv3.Rout.save’ ... OK
      Running ‘coxsurv4.R’ [1s/1s]
      Comparing ‘coxsurv4.Rout’ to ‘coxsurv4.Rout.save’ ... OK
      Running ‘coxsurv5.R’ [1s/1s]
      Comparing ‘coxsurv5.Rout’ to ‘coxsurv5.Rout.save’ ... OK
      Running ‘coxsurv6.R’ [1s/1s]
      Comparing ‘coxsurv6.Rout’ to ‘coxsurv6.Rout.save’ ... OK
      Running ‘detail.R’ [1s/1s]
      Comparing ‘detail.Rout’ to ‘detail.Rout.save’ ... OK
      Running ‘difftest.R’ [1s/1s]
      Comparing ‘difftest.Rout’ to ‘difftest.Rout.save’ ... OK
      Running ‘doaml.R’ [1s/1s]
      Comparing ‘doaml.Rout’ to ‘doaml.Rout.save’ ... OK
      Running ‘doweight.R’ [1s/1s]
      Comparing ‘doweight.Rout’ to ‘doweight.Rout.save’ ... OK
      Running ‘dropspecial.R’ [1s/1s]
      Comparing ‘dropspecial.Rout’ to ‘dropspecial.Rout.save’ ... OK
      Running ‘expected.R’ [1s/1s]
      Comparing ‘expected.Rout’ to ‘expected.Rout.save’ ... OK
      Running ‘expected2.R’ [1s/1s]
      Comparing ‘expected2.Rout’ to ‘expected2.Rout.save’ ... OK
      Running ‘factor.R’ [1s/1s]
      Comparing ‘factor.Rout’ to ‘factor.Rout.save’ ... OK
      Running ‘factor2.R’ [1s/1s]
      Comparing ‘factor2.Rout’ to ‘factor2.Rout.save’ ... OK
      Running ‘finegray.R’ [1s/1s]
      Comparing ‘finegray.Rout’ to ‘finegray.Rout.save’ ... OK
      Running ‘fr_cancer.R’ [1s/1s]
      Comparing ‘fr_cancer.Rout’ to ‘fr_cancer.Rout.save’ ... OK
      Running ‘fr_kidney.R’ [1s/1s]
      Comparing ‘fr_kidney.Rout’ to ‘fr_kidney.Rout.save’ ... OK
      Running ‘fr_lung.R’ [1s/1s]
      Comparing ‘fr_lung.Rout’ to ‘fr_lung.Rout.save’ ... OK
      Running ‘fr_ovarian.R’ [1s/1s]
      Comparing ‘fr_ovarian.Rout’ to ‘fr_ovarian.Rout.save’ ... OK
      Running ‘fr_rat1.R’ [1s/1s]
      Comparing ‘fr_rat1.Rout’ to ‘fr_rat1.Rout.save’ ... OK
      Running ‘fr_resid.R’ [1s/1s]
      Comparing ‘fr_resid.Rout’ to ‘fr_resid.Rout.save’ ... OK
      Running ‘fr_simple.R’ [1s/1s]
      Comparing ‘fr_simple.Rout’ to ‘fr_simple.Rout.save’ ... OK
      Running ‘frailty.R’ [1s/1s]
      Comparing ‘frailty.Rout’ to ‘frailty.Rout.save’ ... OK
      Running ‘frank.R’ [1s/1s]
      Comparing ‘frank.Rout’ to ‘frank.Rout.save’ ... OK
      Running ‘infcox.R’ [1s/1s]
      Comparing ‘infcox.Rout’ to ‘infcox.Rout.save’ ... OK
      Running ‘jasa.R’ [1s/1s]
      Comparing ‘jasa.Rout’ to ‘jasa.Rout.save’ ... OK
      Running ‘model.matrix.R’ [1s/1s]
      Comparing ‘model.matrix.Rout’ to ‘model.matrix.Rout.save’ ... OK
      Running ‘mstate.R’ [1s/1s]
      Comparing ‘mstate.Rout’ to ‘mstate.Rout.save’ ... OK
      Running ‘mstrata.R’ [1s/1s]
      Comparing ‘mstrata.Rout’ to ‘mstrata.Rout.save’ ... OK
      Running ‘multi2.R’ [1s/1s]
      Comparing ‘multi2.Rout’ to ‘multi2.Rout.save’ ... OK
      Running ‘multi3.R’ [1s/1s]
      Comparing ‘multi3.Rout’ to ‘multi3.Rout.save’ ... OK
      Running ‘multistate.R’ [1s/1s]
      Comparing ‘multistate.Rout’ to ‘multistate.Rout.save’ ... OK
      Running ‘neardate.R’ [1s/1s]
      Comparing ‘neardate.Rout’ to ‘neardate.Rout.save’ ... OK
      Running ‘nested.R’ [1s/1s]
      Comparing ‘nested.Rout’ to ‘nested.Rout.save’ ... OK
      Running ‘nsk.R’ [1s/1s]
      Comparing ‘nsk.Rout’ to ‘nsk.Rout.save’ ... OK
      Running ‘ovarian.R’ [1s/1s]
      Comparing ‘ovarian.Rout’ to ‘ovarian.Rout.save’ ... OK
      Running ‘overlap.R’ [1s/1s]
      Comparing ‘overlap.Rout’ to ‘overlap.Rout.save’ ... OK
      Running ‘prednew.R’ [1s/1s]
      Comparing ‘prednew.Rout’ to ‘prednew.Rout.save’ ... OK
      Running ‘pseudo.R’ [1s/1s]
      Comparing ‘pseudo.Rout’ to ‘pseudo.Rout.save’ ... OK
      Running ‘pspline.R’ [1s/1s]
      Comparing ‘pspline.Rout’ to ‘pspline.Rout.save’ ... OK
      Running ‘pyear.R’ [1s/1s]
      Comparing ‘pyear.Rout’ to ‘pyear.Rout.save’ ... OK
      Running ‘quantile.R’ [1s/1s]
      Comparing ‘quantile.Rout’ to ‘quantile.Rout.save’ ... OK
      Running ‘r_lung.R’ [1s/1s]
      Comparing ‘r_lung.Rout’ to ‘r_lung.Rout.save’ ... OK
      Running ‘r_resid.R’ [1s/1s]
      Comparing ‘r_resid.Rout’ to ‘r_resid.Rout.save’ ... OK
      Running ‘r_sas.R’ [2s/2s]
      Comparing ‘r_sas.Rout’ to ‘r_sas.Rout.save’ ... OK
      Running ‘r_scale.R’ [1s/1s]
      Comparing ‘r_scale.Rout’ to ‘r_scale.Rout.save’ ... OK
      Running ‘r_stanford.R’ [1s/1s]
      Comparing ‘r_stanford.Rout’ to ‘r_stanford.Rout.save’ ... OK
      Running ‘r_strata.R’ [1s/1s]
      Comparing ‘r_strata.Rout’ to ‘r_strata.Rout.save’ ... OK
      Running ‘r_tdist.R’ [1s/1s]
      Comparing ‘r_tdist.Rout’ to ‘r_tdist.Rout.save’ ... OK
      Running ‘r_user.R’ [1s/1s]
      Comparing ‘r_user.Rout’ to ‘r_user.Rout.save’ ... OK
      Running ‘ratetable.R’ [1s/1s]
      Comparing ‘ratetable.Rout’ to ‘ratetable.Rout.save’ ... OK
      Running ‘residsf.R’ [1s/1s]
      Comparing ‘residsf.Rout’ to ‘residsf.Rout.save’ ... OK
      Running ‘royston.R’ [1s/1s]
      Comparing ‘royston.Rout’ to ‘royston.Rout.save’ ... OK
      Running ‘rttright.R’ [1s/1s]
      Comparing ‘rttright.Rout’ to ‘rttright.Rout.save’ ... OK
      Running ‘singtest.R’ [1s/1s]
      Comparing ‘singtest.Rout’ to ‘singtest.Rout.save’ ... OK
      Running ‘strata2.R’ [1s/1s]
      Comparing ‘strata2.Rout’ to ‘strata2.Rout.save’ ... OK
      Running ‘stratatest.R’ [1s/1s]
      Comparing ‘stratatest.Rout’ to ‘stratatest.Rout.save’ ... OK
      Running ‘summary_survfit.R’ [1s/1s]
      Comparing ‘summary_survfit.Rout’ to ‘summary_survfit.Rout.save’ ... OK
      Running ‘surv.R’ [1s/1s]
      Comparing ‘surv.Rout’ to ‘surv.Rout.save’ ... OK
      Running ‘survSplit.R’ [1s/1s]
      Comparing ‘survSplit.Rout’ to ‘survSplit.Rout.save’ ... OK
      Running ‘survcheck.R’ [1s/1s]
      Comparing ‘survcheck.Rout’ to ‘survcheck.Rout.save’ ... OK
      Running ‘survfit1.R’ [1s/1s]
      Comparing ‘survfit1.Rout’ to ‘survfit1.Rout.save’ ... OK
      Running ‘survfit2.R’ [1s/1s]
      Comparing ‘survfit2.Rout’ to ‘survfit2.Rout.save’ ... OK
      Running ‘survreg1.R’ [1s/1s]
      Comparing ‘survreg1.Rout’ to ‘survreg1.Rout.save’ ... OK
      Running ‘survreg2.R’ [1s/1s]
      Comparing ‘survreg2.Rout’ to ‘survreg2.Rout.save’ ... OK
      Running ‘survtest.R’ [1s/1s]
      Comparing ‘survtest.Rout’ to ‘survtest.Rout.save’ ... OK
      Running ‘testci.R’ [1s/1s]
      Comparing ‘testci.Rout’ to ‘testci.Rout.save’ ... OK
      Running ‘testci2.R’ [1s/1s]
      Comparing ‘testci2.Rout’ to ‘testci2.Rout.save’ ... OK
      Running ‘testnull.R’ [1s/1s]
      Comparing ‘testnull.Rout’ to ‘testnull.Rout.save’ ... OK
      Running ‘testreg.R’ [1s/1s]
      Comparing ‘testreg.Rout’ to ‘testreg.Rout.save’ ... OK
      Running ‘tiedtime.R’ [1s/1s]
      Comparing ‘tiedtime.Rout’ to ‘tiedtime.Rout.save’ ... OK
      Running ‘tmerge.R’ [1s/1s]
      Comparing ‘tmerge.Rout’ to ‘tmerge.Rout.save’ ... OK
      Running ‘tmerge2.R’ [1s/1s]
      Comparing ‘tmerge2.Rout’ to ‘tmerge2.Rout.save’ ... OK
      Running ‘tmerge3.R’ [1s/1s]
      Comparing ‘tmerge3.Rout’ to ‘tmerge3.Rout.save’ ... OK
      Running ‘tt.R’ [1s/1s]
      Comparing ‘tt.Rout’ to ‘tt.Rout.save’ ... OK
      Running ‘tt2.R’ [1s/1s]
      Comparing ‘tt2.Rout’ to ‘tt2.Rout.save’ ... OK
      Running ‘turnbull.R’ [1s/1s]
      Comparing ‘turnbull.Rout’ to ‘turnbull.Rout.save’ ... OK
      Running ‘update.R’ [1s/1s]
      Comparing ‘update.Rout’ to ‘update.Rout.save’ ... OK
      Running ‘yates0.R’ [0s/0s]
      Comparing ‘yates0.Rout’ to ‘yates0.Rout.save’ ...63c63
    < 1 2 3
    ---
    > A B C
      Running ‘yates1.R’ [1s/1s]
      Comparing ‘yates1.Rout’ to ‘yates1.Rout.save’ ... OK
      Running ‘yates2.R’ [1s/1s]
      Running ‘zph.R’ [1s/1s]
      Comparing ‘zph.Rout’ to ‘zph.Rout.save’ ... OK
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes in ‘inst/doc’ ... OK
  • checking running R code from vignettes ... [35s/37s] OK
      ‘adjcurve.Rnw’... [3s/4s] OK
      ‘approximate.Rnw’... [1s/1s] OK
      ‘compete.Rnw’... [2s/2s] OK
      ‘concordance.Rnw’... [1s/1s] OK
      ‘discrim.Rnw’... [1s/1s] OK
      ‘matrix.Rnw’... [1s/1s] OK
      ‘multi.Rnw’... [0s/0s] OK
      ‘other.Rnw’... [0s/0s] OK
      ‘population.Rnw’... [8s/8s] OK
      ‘redistribute.Rnw’... [6s/6s] OK
      ‘splines.Rnw’... [1s/1s] OK
      ‘survival.Rnw’... [6s/6s] OK
      ‘tiedtimes.Rnw’... [1s/1s] OK
      ‘timedep.Rnw’... [1s/2s] OK
      ‘validate.Rnw’... [1s/1s] OK
  • checking re-building of vignette outputs ... [59s/64s] OK
  • checking PDF version of manual ... OK
  • DONE
    Status: 1 NOTE
  • using check arguments '--no-clean-on-error '