Check results for 'stars'

using R version 4.1.1 Patched (2021-09-05 r80862)
using platform: aarch64-apple-darwin20 (64-bit)
using session charset: UTF-8
checking for file ‘stars/DESCRIPTION’ ... OK
this is package ‘stars’ version ‘0.5-6’
package encoding: UTF-8
checking package namespace information ... OK
checking package dependencies ... NOTE
Package suggested but not available for checking: ‘starsdata’
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘stars’ can be installed ... [6s/6s] OK
checking installed package size ... NOTE
  installed size is 5.5Mb
  sub-directories of 1Mb or more:
    doc 1.7Mb
    nc 1.7Mb
checking package directory ... OK
checking ‘build’ directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking whether the package can be unloaded cleanly ... OK
checking whether the namespace can be loaded with stated dependencies ... OK
checking whether the namespace can be unloaded cleanly ... OK
checking loading without being on the library search path ... OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [7s/8s] OK
checking Rd files ... [0s/0s] OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... OK
checking LazyData ... OK
checking data for ASCII and uncompressed saves ... OK
checking installed files from ‘inst/doc’ ... OK
checking files in ‘vignettes’ ... OK
checking examples ... [14s/15s] ERROR
Running examples in ‘stars-Ex.R’ failed
The error most likely occurred in:

> ### Name: st_warp
> ### Title: Warp (resample) grids in stars objects to a new grid, possibly
> ### in an new coordinate reference system
> ### Aliases: st_warp
>
> ### ** Examples
>
> geomatrix = system.file("tif/geomatrix.tif", package = "stars")
> (x = read_stars(geomatrix))
stars object with 2 dimensions and 1 attribute
attribute(s):
               Min. 1st Qu. Median Mean 3rd Qu. Max.
geomatrix.tif 74 107 123 126.765 132 255
dimension(s):
  from to offset delta refsys point values x/y
x 1 20 1841002 1.5 WGS 84 / UTM zone 11N TRUE NULL [x]
y 1 20 1144003 -1.5 WGS 84 / UTM zone 11N TRUE NULL [y]
sheared raster with parameters: -5 -5
> new_crs = st_crs(4326)
> y = st_warp(x, crs = new_crs)
> plot(st_transform(st_as_sfc(st_bbox(x)), new_crs), col = NA, border = 'red')
> plot(st_as_sfc(y, as_points=FALSE), col = NA, border = 'green', axes = TRUE, add = TRUE)
> image(y, add = TRUE, nbreaks = 6)
> plot(st_as_sfc(y, as_points=TRUE), pch=3, cex=.5, col = 'blue', add = TRUE)
> plot(st_transform(st_as_sfc(x, as_points=FALSE), new_crs), add = TRUE)
> # warp 0-360 raster to -180-180 raster:
> r = read_stars(system.file("nc/reduced.nc", package = "stars"))
trying to read file: /Volumes/Builds/packages/big-sur-arm64/results/4.1/stars.Rcheck/stars/nc/reduced.nc
Error in CPL_read_gdal(as.character(x), as.character(options), as.character(driver), :
  file not found
Calls: read_stars ... is_big -> read_stars -> <Anonymous> -> CPL_read_gdal
Execution halted
checking for unstated dependencies in ‘tests’ ... OK
checking tests ... [7s/7s] ERROR
  Running ‘aggregate.R’ [1s/1s]
  Comparing ‘aggregate.Rout’ to ‘aggregate.Rout.save’ ...4c4
< Linking to GEOS 3.10.2, GDAL 3.4.2, PROJ 8.2.1; sf_use_s2() is TRUE
---
> Linking to GEOS 3.10.2, GDAL 3.4.3, PROJ 8.2.0; sf_use_s2() is TRUE
  Running ‘align.R’ [1s/1s]
  Comparing ‘align.Rout’ to ‘align.Rout.save’ ... OK
  Running ‘area.R’ [1s/1s]
  Comparing ‘area.Rout’ to ‘area.Rout.save’ ... OK
  Running ‘crop.R’ [2s/2s]
  Comparing ‘crop.Rout’ to ‘crop.Rout.save’ ... OK
  Running ‘curvilinear.R’ [1s/1s]
  Comparing ‘curvilinear.Rout’ to ‘curvilinear.Rout.save’ ... OK
  Running ‘datasets.R’ [1s/1s]
  Comparing ‘datasets.Rout’ to ‘datasets.Rout.save’ ... OK
  Running ‘dimensions.R’ [1s/1s]
Running the tests in ‘tests/dimensions.R’ failed.
Complete output:
  > # https://github.com/r-spatial/stars/issues/295
  > suppressPackageStartupMessages(library(stars))
  > raw <- read_stars(system.file("nc/bcsd_obs_1999.nc", package = "stars"))
  trying to read file: /Volumes/Builds/packages/big-sur-arm64/results/4.1/stars.Rcheck/stars/nc/bcsd_obs_1999.nc
  Error in CPL_read_gdal(as.character(x), as.character(options), as.character(driver), :
    file not found
  Calls: read_stars ... is_big -> read_stars -> <Anonymous> -> CPL_read_gdal
  Execution halted
checking for unstated dependencies in vignettes ... OK
checking package vignettes in ‘inst/doc’ ... OK
checking running R code from vignettes ... [1s/2s] NONE
  ‘stars1.Rmd’ using ‘UTF-8’... [0s/0s] OK
  ‘stars2.Rmd’ using ‘UTF-8’... [0s/0s] OK
  ‘stars3.Rmd’ using ‘UTF-8’... [0s/0s] OK
  ‘stars4.Rmd’ using ‘UTF-8’... [0s/0s] OK
  ‘stars5.Rmd’ using ‘UTF-8’... [0s/0s] OK
  ‘stars6.Rmd’ using ‘UTF-8’... [0s/0s] OK
  ‘stars7.Rmd’ using ‘UTF-8’... [0s/0s] OK
  ‘stars8.Rmd’ using ‘UTF-8’... [0s/0s] OK
checking re-building of vignette outputs ... [30s/34s] OK
checking PDF version of manual ... OK
DONE
Status: 2 ERRORs, 2 NOTEs
using check arguments '--no-clean-on-error '