* installing *source* package ‘secrfunc’ ... ** package ‘secrfunc’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c autils.cpp -o autils.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c detectfn.cpp -o detectfn.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c hdot.cpp -o hdot.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c makegkpoly.cpp -o makegkpoly.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c polygonNR.cpp -o polygonNR.o In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from polygonNR.cpp:1: In file included from ./poly.h:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include/RcppNumerical.h:10: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from detectfn.cpp:1: In file included from ./poly.h:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include/RcppNumerical.h:10: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from makegkpoly.cpp:1: In file included from ./poly.h:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include/RcppNumerical.h:10: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from polygonNR.cpp:1: In file included from ./poly.h:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include/RcppNumerical.h:10: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from detectfn.cpp:1: In file included from ./poly.h:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include/RcppNumerical.h:10: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from autils.cpp:1: In file included from ./poly.h:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include/RcppNumerical.h:10: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from makegkpoly.cpp:1: In file included from ./poly.h:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include/RcppNumerical.h:10: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from autils.cpp:1: In file included from ./poly.h:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include/RcppNumerical.h:10: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from polygonNR.cpp:1: In file included from ./poly.h:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include/RcppNumerical.h:10: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from detectfn.cpp:1: In file included from ./poly.h:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include/RcppNumerical.h:10: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from makegkpoly.cpp:1: In file included from ./poly.h:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include/RcppNumerical.h:10: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from autils.cpp:1: In file included from ./poly.h:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include/RcppNumerical.h:10: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from hdot.cpp:2: In file included from ./poly.h:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include/RcppNumerical.h:10: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from hdot.cpp:2: In file included from ./poly.h:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include/RcppNumerical.h:10: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from hdot.cpp:2: In file included from ./poly.h:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include/RcppNumerical.h:10: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from polygonNR.cpp:1: In file included from ./poly.h:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include/RcppNumerical.h:10: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from detectfn.cpp:1: In file included from ./poly.h:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include/RcppNumerical.h:10: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from makegkpoly.cpp:1: In file included from ./poly.h:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include/RcppNumerical.h:10: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from autils.cpp:1: In file included from ./poly.h:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include/RcppNumerical.h:10: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from hdot.cpp:2: In file included from ./poly.h:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include/RcppNumerical.h:10: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ 5 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c prwipolygon.cpp -o prwipolygon.o In file included from prwipolygon.cpp:1: In file included from ./poly.h:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include/RcppNumerical.h:10: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from prwipolygon.cpp:1: In file included from ./poly.h:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include/RcppNumerical.h:10: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ polygonNR.cpp:58:9: warning: private field 'fn' is not used [-Wunused-private-field] int fn; ^ polygonNR.cpp:148:9: warning: private field 'fn' is not used [-Wunused-private-field] int fn; ^ polygonNR.cpp:190:19: warning: private field 'fn' is not used [-Wunused-private-field] const int fn; ^ polygonNR.cpp:191:19: warning: private field 'n1' is not used [-Wunused-private-field] int n1; ^ polygonNR.cpp:192:19: warning: private field 'n2' is not used [-Wunused-private-field] int n2; ^ polygonNR.cpp:334:19: warning: private field 'fn' is not used [-Wunused-private-field] const int fn; ^ polygonNR.cpp:337:22: warning: private field 'ay' is not used [-Wunused-private-field] const double ay; ^ polygonNR.cpp:338:22: warning: private field 'by' is not used [-Wunused-private-field] const double by; ^ polygonNR.cpp:543:9: warning: private field 'fn' is not used [-Wunused-private-field] int fn; ^ polygonNR.cpp:563:9: warning: private field 'fn' is not used [-Wunused-private-field] int fn; ^ In file included from prwipolygon.cpp:1: In file included from ./poly.h:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include/RcppNumerical.h:10: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from prwipolygon.cpp:1: In file included from ./poly.h:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include/RcppNumerical.h:10: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ 5 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c prwipolygonfxi.cpp -o prwipolygonfxi.o 5 warnings generated. 5 warnings generated. 5 warnings generated. 15 warnings generated. In file included from prwipolygonfxi.cpp:1: In file included from ./poly.h:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include/RcppNumerical.h:10: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from prwipolygonfxi.cpp:1: In file included from ./poly.h:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include/RcppNumerical.h:10: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from prwipolygonfxi.cpp:1: In file included from ./poly.h:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include/RcppNumerical.h:10: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from prwipolygonfxi.cpp:1: In file included from ./poly.h:15: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppNumerical/include/RcppNumerical.h:10: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ 5 warnings generated. 5 warnings generated. clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o secrfunc.so RcppExports.o autils.o detectfn.o hdot.o makegkpoly.o polygonNR.o prwipolygon.o prwipolygonfxi.o -L/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppParallel/lib -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Builds/packages/big-sur-arm64/results/4.4/secrfunc.Rcheck/00LOCK-secrfunc/00new/secrfunc/libs ** generating debug symbols (dSYM) ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (secrfunc)