• using R version 4.4.1 (2024-06-14)
• using platform: aarch64-apple-darwin20
• R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 12.2.0
• running under: macOS Ventura 13.4
• using session charset: UTF-8
• checking for file ‘scDiffCom/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘scDiffCom’ version ‘1.2.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘scDiffCom’ can be installed ... [14s/16s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
• checking whether the package can be unloaded cleanly ... [2s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/3s] OK
• checking loading without being on the library search path ... [3s/3s] OK
• checking dependencies in R code ... NOTE Error in py_module_import(module, convert = convert) :   ModuleNotFoundError: No module named 'owlready2' Run `reticulate::py_last_error()` for details. Using Python: /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/bin/python3.9 Creating virtual environment 'r-owlready2' ... Done! Installing packages: pip, wheel, setuptools Requirement already satisfied: pip in /Users/pkgbuild/.virtualenvs/r-owlready2/lib/python3.9/site-packages (21.2.4) Collecting pip   Using cached pip-25.2-py3-none-any.whl (1.8 MB) Collecting wheel   Using cached wheel-0.45.1-py3-none-any.whl (72 kB) Requirement already satisfied: setuptools in /Users/pkgbuild/.virtualenvs/r-owlready2/lib/python3.9/site-packages (58.0.4) Collecting setuptools   Using cached setuptools-80.9.0-py3-none-any.whl (1.2 MB) Installing collected packages: wheel, setuptools, pip   Attempting uninstall: setuptools     Found existing installation: setuptools 58.0.4     Uninstalling setuptools-58.0.4:       Successfully uninstalled setuptools-58.0.4   Attempting uninstall: pip     Found existing installation: pip 21.2.4     Uninstalling pip-21.2.4:       Successfully uninstalled pip-21.2.4 Successfully installed pip-25.2 setuptools-80.9.0 wheel-0.45.1 Virtual environment 'r-owlready2' successfully created. Using virtual environment 'r-owlready2' ... Collecting owlready2   Downloading owlready2-0.48.tar.gz (27.3 MB)      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 27.3/27.3 MB 3.8 MB/s 0:00:07   Installing build dependencies: started   Installing build dependencies: finished with status 'done'   Getting requirements to build wheel: started   Getting requirements to build wheel: finished with status 'done'   Preparing metadata (pyproject.toml): started   Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: owlready2   Building wheel for owlready2 (pyproject.toml): started   Building wheel for owlready2 (pyproject.toml): finished with status 'done'   Created wheel for owlready2: filename=owlready2-0.48-cp39-cp39-macosx_11_0_universal2.whl size=23084262 sha256=5003cdf853da3e248914c7f9ae4bbcefcc629037538c6cd9acfa152a2c2e2ee8   Stored in directory: /Users/pkgbuild/Library/Caches/pip/wheels/70/6f/5c/2e8a43efa7697b1bd04085d4e8d97a82b19e4ee37c710a9f7b Successfully built owlready2 Installing collected packages: owlready2 Successfully installed owlready2-0.48
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [12s/13s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [4s/5s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking R/sysdata.rda ... OK
• checking examples ... [3s/4s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [49s/48s] OK   Running ‘spelling.R’ [0s/0s]   Running ‘testthat.R’ [49s/48s]
• checking PDF version of manual ... [4s/4s] OK
• DONE Status: 1 NOTE
• using check arguments '--no-clean-on-error '