* installing *source* package ‘rchime’ ...
** this is package ‘rchime’ version ‘0.1.0’
** package ‘rchime’ successfully unpacked and MD5 sums checked
** using staged installation
Error in which(flags) : argument to 'which' is not logical
Calls: cat -> <Anonymous> -> .makeFlags -> which
Execution halted
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppXsimd/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/cli/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppXsimd/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/cli/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c align_simd.cc -o align_simd.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppXsimd/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/cli/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c bitmap.cc -o bitmap.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppXsimd/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/cli/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c chimera_vsearch.cpp -o chimera_vsearch.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppXsimd/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/cli/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c cigar.cpp -o cigar.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppXsimd/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/cli/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c cpu.cc -o cpu.o
In file included from align_simd.cc:62:
./align_simd.h:145:63: error: implicit instantiation of undefined template 'std::array<std::array<long long, 16>, 16>'
std::array<std::array<int64_t, matrix_size>, matrix_size> scorematrix {{}};
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__tuple:219:64: note: template is declared here
template <class _Tp, size_t _Size> struct _LIBCPP_TEMPLATE_VIS array;
^
In file included from chimera_vsearch.cpp:3:
In file included from ./vsearch_main.h:69:
In file included from ./searchcore.h:71:
./align_simd.h:145:63: error: implicit instantiation of undefined template 'std::array<std::array<long long, 16>, 16>'
std::array<std::array<int64_t, matrix_size>, matrix_size> scorematrix {{}};
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__tuple:219:64: note: template is declared here
template <class _Tp, size_t _Size> struct _LIBCPP_TEMPLATE_VIS array;
^
1 error generated.
make: *** [align_simd.o] Error 1
make: *** Waiting for unfinished jobs....
1 error generated.
make: *** [chimera_vsearch.o] Error 1
ERROR: compilation failed for package ‘rchime’
* removing ‘/Volumes/Builds/packages/big-sur-arm64/results/4.5/rchime.Rcheck/rchime’