Check results for 'quhomology'

using R version 4.4.0 alpha (2024-03-31 r86238)
using platform: aarch64-apple-darwin20
R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0
running under: macOS Ventura 13.4
using session charset: UTF-8
checking for file ‘quhomology/DESCRIPTION’ ... OK
checking extension type ... Package
this is package ‘quhomology’ version ‘1.1.1’
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘quhomology’ can be installed ... [1s/1s] OK See the install log for details.
checking installed package size ... OK
checking package directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking code files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [0s/0s] OK
checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
checking whether the package can be unloaded cleanly ... [0s/0s] OK
checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
checking loading without being on the library search path ... [0s/0s] OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [1s/1s] OK
checking Rd files ... [0s/0s] NOTE checkRd: (-1) boundary_matrix.Rd:28: Lost braces; missing escapes or markup? 28 | This functions takes all words (or just the non-degenerate ones) of length $degree$ in the rack/biquandle (which are represented by $Z_k$) and then calculates their boundary via the following equation. For this, let $x=(x_i)_0^{degree-1}$ be an element of the rack/birack and let $n:=degree-1$. | ^ checkRd: (-1) boundary_matrix.Rd:29: Lost braces; missing escapes or markup? 29 | $$partial(x) = Sum_{i=0}^n (-1)^i ( (x_0...{(^x_i)}...x_n)-(x_0^{x_i}x_1^{x_i}...x_{i-1}^{x_i}{x_{i+1}}_{x_i}...{x_n}_{x_i}) )$$, where ^x_i means except x_i. | ^ checkRd: (-1) boundary_matrix.Rd:29: Lost braces; missing escapes or markup? 29 | $$partial(x) = Sum_{i=0}^n (-1)^i ( (x_0...{(^x_i)}...x_n)-(x_0^{x_i}x_1^{x_i}...x_{i-1}^{x_i}{x_{i+1}}_{x_i}...{x_n}_{x_i}) )$$, where ^x_i means except x_i. | ^ checkRd: (-1) boundary_matrix.Rd:29: Lost braces; missing escapes or markup? 29 | $$partial(x) = Sum_{i=0}^n (-1)^i ( (x_0...{(^x_i)}...x_n)-(x_0^{x_i}x_1^{x_i}...x_{i-1}^{x_i}{x_{i+1}}_{x_i}...{x_n}_{x_i}) )$$, where ^x_i means except x_i. | ^ checkRd: (-1) boundary_matrix.Rd:29: Lost braces; missing escapes or markup? 29 | $$partial(x) = Sum_{i=0}^n (-1)^i ( (x_0...{(^x_i)}...x_n)-(x_0^{x_i}x_1^{x_i}...x_{i-1}^{x_i}{x_{i+1}}_{x_i}...{x_n}_{x_i}) )$$, where ^x_i means except x_i. | ^ checkRd: (-1) boundary_matrix.Rd:29: Lost braces; missing escapes or markup? 29 | $$partial(x) = Sum_{i=0}^n (-1)^i ( (x_0...{(^x_i)}...x_n)-(x_0^{x_i}x_1^{x_i}...x_{i-1}^{x_i}{x_{i+1}}_{x_i}...{x_n}_{x_i}) )$$, where ^x_i means except x_i. | ^ checkRd: (-1) boundary_matrix.Rd:29: Lost braces; missing escapes or markup? 29 | $$partial(x) = Sum_{i=0}^n (-1)^i ( (x_0...{(^x_i)}...x_n)-(x_0^{x_i}x_1^{x_i}...x_{i-1}^{x_i}{x_{i+1}}_{x_i}...{x_n}_{x_i}) )$$, where ^x_i means except x_i. | ^ checkRd: (-1) boundary_matrix.Rd:29: Lost braces 29 | $$partial(x) = Sum_{i=0}^n (-1)^i ( (x_0...{(^x_i)}...x_n)-(x_0^{x_i}x_1^{x_i}...x_{i-1}^{x_i}{x_{i+1}}_{x_i}...{x_n}_{x_i}) )$$, where ^x_i means except x_i. | ^ checkRd: (-1) boundary_matrix.Rd:29: Lost braces; missing escapes or markup? 29 | $$partial(x) = Sum_{i=0}^n (-1)^i ( (x_0...{(^x_i)}...x_n)-(x_0^{x_i}x_1^{x_i}...x_{i-1}^{x_i}{x_{i+1}}_{x_i}...{x_n}_{x_i}) )$$, where ^x_i means except x_i. | ^ checkRd: (-1) boundary_matrix.Rd:29: Lost braces; missing escapes or markup? 29 | $$partial(x) = Sum_{i=0}^n (-1)^i ( (x_0...{(^x_i)}...x_n)-(x_0^{x_i}x_1^{x_i}...x_{i-1}^{x_i}{x_{i+1}}_{x_i}...{x_n}_{x_i}) )$$, where ^x_i means except x_i. | ^ checkRd: (-1) boundary_matrix.Rd:29: Lost braces; missing escapes or markup? 29 | $$partial(x) = Sum_{i=0}^n (-1)^i ( (x_0...{(^x_i)}...x_n)-(x_0^{x_i}x_1^{x_i}...x_{i-1}^{x_i}{x_{i+1}}_{x_i}...{x_n}_{x_i}) )$$, where ^x_i means except x_i. | ^ checkRd: (-1) boundary_matrix.Rd:29: Lost braces; missing escapes or markup? 29 | $$partial(x) = Sum_{i=0}^n (-1)^i ( (x_0...{(^x_i)}...x_n)-(x_0^{x_i}x_1^{x_i}...x_{i-1}^{x_i}{x_{i+1}}_{x_i}...{x_n}_{x_i}) )$$, where ^x_i means except x_i. | ^ checkRd: (-1) boundary_matrix_degenerate.Rd:25: Lost braces; missing escapes or markup? 25 | This functions takes all degenerate words of length $degree$ in the rack/biquandle (which are represented by ${Z}_k$) and then calculates their boundary via the followi ng equation. For this, let $x=(x_i)_0^{degree-1}$ be an element of the rack/birack and let $n:=degree-1$. | ^ checkRd: (-1) boundary_matrix_degenerate.Rd:25: Lost braces; missing escapes or markup? 25 | This functions takes all degenerate words of length $degree$ in the rack/biquandle (which are represented by ${Z}_k$) and then calculates their boundary via the followi ng equation. For this, let $x=(x_i)_0^{degree-1}$ be an element of the rack/birack and let $n:=degree-1$. | ^ checkRd: (-1) boundary_matrix_degenerate.Rd:26: Lost braces; missing escapes or markup? 26 | $$partial(x) = Sum_{i=0}^n (-1)^i ( (x_0...{(^x_i)}...x_n)-(x_0^{x_i}x_1^{x_i}...x_{i-1}^{x_i}{x_{i+1}}_{x_i}...{x_n}_{x_i}) )$$, where ^x_i means except x_i. | ^ checkRd: (-1) boundary_matrix_degenerate.Rd:26: Lost braces; missing escapes or markup? 26 | $$partial(x) = Sum_{i=0}^n (-1)^i ( (x_0...{(^x_i)}...x_n)-(x_0^{x_i}x_1^{x_i}...x_{i-1}^{x_i}{x_{i+1}}_{x_i}...{x_n}_{x_i}) )$$, where ^x_i means except x_i. | ^ checkRd: (-1) boundary_matrix_degenerate.Rd:26: Lost braces; missing escapes or markup? 26 | $$partial(x) = Sum_{i=0}^n (-1)^i ( (x_0...{(^x_i)}...x_n)-(x_0^{x_i}x_1^{x_i}...x_{i-1}^{x_i}{x_{i+1}}_{x_i}...{x_n}_{x_i}) )$$, where ^x_i means except x_i. | ^ checkRd: (-1) boundary_matrix_degenerate.Rd:26: Lost braces; missing escapes or markup? 26 | $$partial(x) = Sum_{i=0}^n (-1)^i ( (x_0...{(^x_i)}...x_n)-(x_0^{x_i}x_1^{x_i}...x_{i-1}^{x_i}{x_{i+1}}_{x_i}...{x_n}_{x_i}) )$$, where ^x_i means except x_i. | ^ checkRd: (-1) boundary_matrix_degenerate.Rd:26: Lost braces; missing escapes or markup? 26 | $$partial(x) = Sum_{i=0}^n (-1)^i ( (x_0...{(^x_i)}...x_n)-(x_0^{x_i}x_1^{x_i}...x_{i-1}^{x_i}{x_{i+1}}_{x_i}...{x_n}_{x_i}) )$$, where ^x_i means except x_i. | ^ checkRd: (-1) boundary_matrix_degenerate.Rd:26: Lost braces; missing escapes or markup? 26 | $$partial(x) = Sum_{i=0}^n (-1)^i ( (x_0...{(^x_i)}...x_n)-(x_0^{x_i}x_1^{x_i}...x_{i-1}^{x_i}{x_{i+1}}_{x_i}...{x_n}_{x_i}) )$$, where ^x_i means except x_i. | ^ checkRd: (-1) boundary_matrix_degenerate.Rd:26: Lost braces 26 | $$partial(x) = Sum_{i=0}^n (-1)^i ( (x_0...{(^x_i)}...x_n)-(x_0^{x_i}x_1^{x_i}...x_{i-1}^{x_i}{x_{i+1}}_{x_i}...{x_n}_{x_i}) )$$, where ^x_i means except x_i. | ^ checkRd: (-1) boundary_matrix_degenerate.Rd:26: Lost braces; missing escapes or markup? 26 | $$partial(x) = Sum_{i=0}^n (-1)^i ( (x_0...{(^x_i)}...x_n)-(x_0^{x_i}x_1^{x_i}...x_{i-1}^{x_i}{x_{i+1}}_{x_i}...{x_n}_{x_i}) )$$, where ^x_i means except x_i. | ^ checkRd: (-1) boundary_matrix_degenerate.Rd:26: Lost braces; missing escapes or markup? 26 | $$partial(x) = Sum_{i=0}^n (-1)^i ( (x_0...{(^x_i)}...x_n)-(x_0^{x_i}x_1^{x_i}...x_{i-1}^{x_i}{x_{i+1}}_{x_i}...{x_n}_{x_i}) )$$, where ^x_i means except x_i. | ^ checkRd: (-1) boundary_matrix_degenerate.Rd:26: Lost braces; missing escapes or markup? 26 | $$partial(x) = Sum_{i=0}^n (-1)^i ( (x_0...{(^x_i)}...x_n)-(x_0^{x_i}x_1^{x_i}...x_{i-1}^{x_i}{x_{i+1}}_{x_i}...{x_n}_{x_i}) )$$, where ^x_i means except x_i. | ^ checkRd: (-1) boundary_matrix_degenerate.Rd:26: Lost braces; missing escapes or markup? 26 | $$partial(x) = Sum_{i=0}^n (-1)^i ( (x_0...{(^x_i)}...x_n)-(x_0^{x_i}x_1^{x_i}...x_{i-1}^{x_i}{x_{i+1}}_{x_i}...{x_n}_{x_i}) )$$, where ^x_i means except x_i. | ^ checkRd: (-1) boundary_names.Rd:26: Lost braces; missing escapes or markup? 26 | This calculates all possible permutations of elements in $Z_k$ of length $degree$. If degenerate is true, it loops through all of them, removing the degenerate ones (that is, those where $x_i=x_{i+1}$, for an element $x=(x_i)_0^{degree})$). | ^ checkRd: (-1) boundary_names.Rd:26: Lost braces; missing escapes or markup? 26 | This calculates all possible permutations of elements in $Z_k$ of length $degree$. If degenerate is true, it loops through all of them, removing the degenerate ones (that is, those where $x_i=x_{i+1}$, for an element $x=(x_i)_0^{degree})$). | ^ checkRd: (-1) boundary_names_degenerate.Rd:23: Lost braces; missing escapes or markup? 23 | This calculates all possible permutations of elements in ${Z}_k$ of length $degree$. If degenerate is true, it loops through all of them, removing the non-degenerate ones (that is, those where $x_i =/= x_{i+1}$ for all $i=0,...,degree-1$, for an element $x=(x_i)_0^{degree})$). | ^ checkRd: (-1) boundary_names_degenerate.Rd:23: Lost braces; missing escapes or markup? 23 | This calculates all possible permutations of elements in ${Z}_k$ of length $degree$. If degenerate is true, it loops through all of them, removing the non-degenerate ones (that is, those where $x_i =/= x_{i+1}$ for all $i=0,...,degree-1$, for an element $x=(x_i)_0^{degree})$). | ^ checkRd: (-1) boundary_names_degenerate.Rd:23: Lost braces; missing escapes or markup? 23 | This calculates all possible permutations of elements in ${Z}_k$ of length $degree$. If degenerate is true, it loops through all of them, removing the non-degenerate ones (that is, those where $x_i =/= x_{i+1}$ for all $i=0,...,degree-1$, for an element $x=(x_i)_0^{degree})$). | ^
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... NOTE Auto-generated content requiring editing in Rd file 'quhomology-package.Rd': \details: ‘...o use the package, including the most important functions ~~’
checking for unstated dependencies in examples ... OK
checking examples ... [1s/1s] OK
checking for unstated dependencies in ‘tests’ ... OK
checking tests ... [1s/1s] OK Running ‘testthat.R’ [1s/1s]
checking PDF version of manual ... [4s/4s] OK
DONE Status: 2 NOTEs
using check arguments '--no-clean-on-error '