- using R version 4.2.0 (2022-04-22)
- using platform: aarch64-apple-darwin20 (64-bit)
- using session charset: UTF-8
- checking for file ‘pastclim/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘pastclim’ version ‘1.2.4’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘pastclim’ can be installed ... [8s/9s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [5s/5s] OK
- checking Rd files ... [0s/0s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking R/sysdata.rda ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [3s/3s] ERROR
Running examples in ‘pastclim-Ex.R’ failed
The error most likely occurred in:
> ### Name: var_labels
> ### Title: Generate pretty variable labels for plotting
> ### Aliases: var_labels
>
> ### ** Examples
>
> var_labels("bio01", dataset = "Example")
expression("annual mean temperature (" * degree * C * ")")
>
> # set the data_path for this example to run on CRAN
> # users don't need to run this line
> set_data_path_for_CRAN()
[1] TRUE
>
> # for a SpatRaster
> climate_20k <- region_slice(
+ time_bp = -20000,
+ bio_variables = c("bio01", "bio10", "bio12"),
+ dataset = "Example"
+ )
> terra::plot(climate_20k, main = var_labels(climate_20k, dataset = "Example"))
Error in x$main != "" : comparison is not allowed for expressions
Calls: <Anonymous> ... plot -> plot -> .local -> .prep.plot.data -> .plotit
Execution halted
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [10s/11s] OK
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [10s/11s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking running R code from vignettes ... [1s/1s] NONE
‘a0_pastclim_overview.Rmd’ using ‘UTF-8’... [0s/0s] OK
‘a1_available_datasets.Rmd’ using ‘UTF-8’... [0s/0s] OK
‘a2_custom_datasets.Rmd’ using ‘UTF-8’... [0s/0s] OK
- checking re-building of vignette outputs ... [7s/9s] ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘a0_pastclim_overview.Rmd’ using rmarkdown
Quitting from lines 393-395 [unnamed-chunk-28] (a0_pastclim_overview.Rmd)
Error: processing vignette 'a0_pastclim_overview.Rmd' failed with diagnostics:
comparison is not allowed for expressions
--- failed re-building ‘a0_pastclim_overview.Rmd’
--- re-building ‘a1_available_datasets.Rmd’ using rmarkdown
--- finished re-building ‘a1_available_datasets.Rmd’
--- re-building ‘a2_custom_datasets.Rmd’ using rmarkdown
--- finished re-building ‘a2_custom_datasets.Rmd’
SUMMARY: processing the following file failed:
‘a0_pastclim_overview.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... OK
- DONE
Status: 2 ERRORs
- using check arguments '--no-clean-on-error '