* installing *source* package ‘nlmixr2est’ ...
** this is package ‘nlmixr2est’ version ‘7.1.0’
** package ‘nlmixr2est’ successfully unpacked and MD5 sums checked
** using staged installation
--------[begin src/Makevars]--------
# -*- mode: makefile-gmake -*-
ARMA=/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include
BH=/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include
RCPP=/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include
RXP=/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include
EG=/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include
CXX_STD = CXX17
PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) $(SHLIB_OPENMP_CXXFLAGS)
PKG_CXXFLAGS = -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"$(BH)" -I"$(RCPP)" -I"$(ARMA)" -I"$(RXP)" -I"$(EG)" $(SHLIB_OPENMP_CXXFLAGS) -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -DEIGEN_DONT_PARALLELIZE
SHLIB_LDFLAGS = $(SHLIB_CXXLDFLAGS)
SHLIB_LD = $(SHLIB_CXXLD)
SOURCES_C = init.c rprintf.c merge3.c lbfgsR.c utilc.c
SOURCES_CPP = uninformativeEtas.cpp nlm.cpp filterNormalLike.cpp inner.cpp odeSwap.cpp imp.cpp npCommon.cpp npag.cpp npb.cpp foceiGrad.cpp shi21.cpp nearPD.cpp censEst.cpp saem.cpp expandNlme.cpp npde.cpp shrink.cpp ires.cpp res.cpp cwres.cpp censResid.cpp cholse.cpp neldermead.cpp resid.cpp slice.cpp RcppExportMod.cpp RcppExports.cpp rxcmp.cpp vaeEncoder.cpp
OBJECTS = $(SOURCES_CPP:.cpp=.o) $(SOURCES_C:.c=.o)
all: $(SHLIB)
$(SHLIB): $(OBJECTS)
# Rebuild every object when any header changes. Without this the objects have
# no header dependencies at all, so editing a shared header leaves stale objects
# linking against the previous signature -- which fails at LOAD time with an
# undefined symbol, or silently keeps running the OLD code, long after a build
# that reported success.
#
# MUST come after `all:` -- the first target in a makefile is the default goal,
# so putting this above it makes the first OBJECT the default and every build
# silently compiles that one file and stops, producing no shared object at all.
#
# -I../inst/include is on the compile line above and sources do include from
# there (nlmixr2est.h, nlmixr2estLikContrib.h, lin_cmt.hpp), so those headers
# need covering too, or the same stale-object failure stays open for exactly
# the headers that cross the package boundary.
HEADERS = armahead.h censEst.h censResid.h cwres.h evaluate.h foceiGrad.h \
imp.h impQrng.h inner.h ires.h likContribUtil.h logSumExp.h \
nearPD.h nmMcmcRng.h nmParallel.h nmParallelCore.h nmSeqSeed.h \
np.h npCommon.h npde.h odeSwap.h res.h rxProtect.h rxomp.h scale.h \
shi21.h shrink.h solveWarnHelper.h truncNorm.h \
trustHessianUpdate.h utilc.h vaeEncoder.h \
../inst/include/lin_cmt.hpp ../inst/include/nlmixr2est.h \
../inst/include/nlmixr2estFoceiPtr.h \
../inst/include/nlmixr2estLikContrib.h \
../inst/include/nlmixr2estLikContribPtr.h \
../inst/include/nlmixr2estNlmPtr.h \
../inst/include/nlmixr2est_RcppExports.h \
../inst/include/nlmixr2est_types.h
$(OBJECTS): $(HEADERS)
--------[end src/Makevars]--------
** libs
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using C++17
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c uninformativeEtas.cpp -o uninformativeEtas.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c nlm.cpp -o nlm.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c filterNormalLike.cpp -o filterNormalLike.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c inner.cpp -o inner.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c odeSwap.cpp -o odeSwap.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c imp.cpp -o imp.o
In file included from nlm.cpp:6:
./censEst.h:392:16: warning: unused variable 'rx_expr_31' [-Wunused-variable]
double rx_expr_31 = erf(rx_expr_25);
^
./censEst.h:351:14: warning: unused variable 'rx_expr_21' [-Wunused-variable]
double rx_expr_21 = erf(rx_expr_18);
^
./censEst.h:472:16: warning: unused variable 'rx_expr_31' [-Wunused-variable]
double rx_expr_31 = erf(rx_expr_25);
^
./censEst.h:431:14: warning: unused variable 'rx_expr_21' [-Wunused-variable]
double rx_expr_21 = erf(rx_expr_18);
^
In file included from inner.cpp:8:
./censEst.h:392:16: warning: unused variable 'rx_expr_31' [-Wunused-variable]
double rx_expr_31 = erf(rx_expr_25);
^
./censEst.h:351:14: warning: unused variable 'rx_expr_21' [-Wunused-variable]
double rx_expr_21 = erf(rx_expr_18);
^
./censEst.h:590:14: warning: unused variable 'rx_expr_48' [-Wunused-variable]
double rx_expr_48 = erf(rx_expr_44);
^
./censEst.h:591:14: warning: unused variable 'rx_expr_49' [-Wunused-variable]
double rx_expr_49 = erf(rx_expr_46);
^
./censEst.h:517:12: warning: unused variable 'rx_expr_29' [-Wunused-variable]
double rx_expr_29 = erf(rx_expr_26);
^
./censEst.h:518:12: warning: unused variable 'rx_expr_30' [-Wunused-variable]
double rx_expr_30 = erf(rx_expr_28);
^
./censEst.h:472:16: warning: unused variable 'rx_expr_31' [-Wunused-variable]
double rx_expr_31 = erf(rx_expr_25);
^
./censEst.h:431:14: warning: unused variable 'rx_expr_21' [-Wunused-variable]
double rx_expr_21 = erf(rx_expr_18);
^
./censEst.h:714:14: warning: unused variable 'rx_expr_34' [-Wunused-variable]
double rx_expr_34 = erf(rx_expr_31);
^
./censEst.h:679:12: warning: unused variable 'rx_expr_18' [-Wunused-variable]
double rx_expr_18 = erf(rx_expr_17);
^
./censEst.h:590:14: warning: unused variable 'rx_expr_48' [-Wunused-variable]
double rx_expr_48 = erf(rx_expr_44);
^
./censEst.h:591:14: warning: unused variable 'rx_expr_49' [-Wunused-variable]
double rx_expr_49 = erf(rx_expr_46);
^
./censEst.h:517:12: warning: unused variable 'rx_expr_29' [-Wunused-variable]
double rx_expr_29 = erf(rx_expr_26);
^
./censEst.h:518:12: warning: unused variable 'rx_expr_30' [-Wunused-variable]
double rx_expr_30 = erf(rx_expr_28);
^
./censEst.h:714:14: warning: unused variable 'rx_expr_34' [-Wunused-variable]
double rx_expr_34 = erf(rx_expr_31);
^
./censEst.h:679:12: warning: unused variable 'rx_expr_18' [-Wunused-variable]
double rx_expr_18 = erf(rx_expr_17);
^
nlm.cpp:882:12: warning: unused variable 'llik' [-Wunused-variable]
double llik;
^
nlm.cpp:396:20: warning: unused function 'nlmIndHasBadSolve' [-Wunused-function]
static inline bool nlmIndHasBadSolve(rx_solving_options *op,
^
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c npCommon.cpp -o npCommon.o
inner.cpp:8139:29: warning: unused variable 'ind' [-Wunused-variable]
rx_solving_options_ind *ind = getSolvingOptionsInd(rx, i);
^
inner.cpp:8274:17: warning: variable 'k' set but not used [-Wunused-but-set-variable]
size_t j = 0, k = 0, ii=0, jj = 0, iA=0, iB=0, iH=0, iVid=0;
^
inner.cpp:8274:50: warning: variable 'iH' set but not used [-Wunused-but-set-variable]
size_t j = 0, k = 0, ii=0, jj = 0, iA=0, iB=0, iH=0, iVid=0;
^
inner.cpp:9885:7: warning: unused variable 'finalize' [-Wunused-variable]
int finalize = 0, i = 0;
^
inner.cpp:9952:7: warning: unused variable 'finalize' [-Wunused-variable]
int finalize=0, i = 0;
^
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c npag.cpp -o npag.o
inner.cpp:12544:12: warning: unused variable 'k' [-Wunused-variable]
int j=0, k=0, l=0;
^
inner.cpp:12544:17: warning: unused variable 'l' [-Wunused-variable]
int j=0, k=0, l=0;
^
imp.cpp:161:22: warning: unused function 'impTScaleU' [-Wunused-function]
static inline double impTScaleU(double u, double df) {
^
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c npb.cpp -o npb.o
In file included from npCommon.cpp:8:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Index count = 0;
^
In file included from npCommon.cpp:8:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
Index nsuper_et = 0; // Number of relaxed snodes in the original etree
^
In file included from npCommon.cpp:8:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
Index replacements = 0;
^
In file included from npCommon.cpp:8:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
int count = 0;
^
inner.cpp:21779:20: warning: unused function 'foceiCondEnterThread' [-Wunused-function]
static inline void foceiCondEnterThread(bool doParallel) {
^
inner.cpp:21786:20: warning: unused function 'foceiCondLeaveThread' [-Wunused-function]
static inline void foceiCondLeaveThread(bool doParallel) {
^
12 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c foceiGrad.cpp -o foceiGrad.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c shi21.cpp -o shi21.o
In file included from foceiGrad.cpp:16:
./censEst.h:392:16: warning: unused variable 'rx_expr_31' [-Wunused-variable]
double rx_expr_31 = erf(rx_expr_25);
^
./censEst.h:351:14: warning: unused variable 'rx_expr_21' [-Wunused-variable]
double rx_expr_21 = erf(rx_expr_18);
^
./censEst.h:472:16: warning: unused variable 'rx_expr_31' [-Wunused-variable]
double rx_expr_31 = erf(rx_expr_25);
^
./censEst.h:431:14: warning: unused variable 'rx_expr_21' [-Wunused-variable]
double rx_expr_21 = erf(rx_expr_18);
^
./censEst.h:590:14: warning: unused variable 'rx_expr_48' [-Wunused-variable]
double rx_expr_48 = erf(rx_expr_44);
^
./censEst.h:591:14: warning: unused variable 'rx_expr_49' [-Wunused-variable]
double rx_expr_49 = erf(rx_expr_46);
^
./censEst.h:517:12: warning: unused variable 'rx_expr_29' [-Wunused-variable]
double rx_expr_29 = erf(rx_expr_26);
^
./censEst.h:518:12: warning: unused variable 'rx_expr_30' [-Wunused-variable]
double rx_expr_30 = erf(rx_expr_28);
^
./censEst.h:714:14: warning: unused variable 'rx_expr_34' [-Wunused-variable]
double rx_expr_34 = erf(rx_expr_31);
^
./censEst.h:679:12: warning: unused variable 'rx_expr_18' [-Wunused-variable]
double rx_expr_18 = erf(rx_expr_17);
^
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c nearPD.cpp -o nearPD.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c censEst.cpp -o censEst.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c saem.cpp -o saem.o
In file included from censEst.cpp:2:
./censEst.h:392:16: warning: unused variable 'rx_expr_31' [-Wunused-variable]
double rx_expr_31 = erf(rx_expr_25);
^
./censEst.h:351:14: warning: unused variable 'rx_expr_21' [-Wunused-variable]
double rx_expr_21 = erf(rx_expr_18);
^
./censEst.h:472:16: warning: unused variable 'rx_expr_31' [-Wunused-variable]
double rx_expr_31 = erf(rx_expr_25);
^
./censEst.h:431:14: warning: unused variable 'rx_expr_21' [-Wunused-variable]
double rx_expr_21 = erf(rx_expr_18);
^
./censEst.h:590:14: warning: unused variable 'rx_expr_48' [-Wunused-variable]
double rx_expr_48 = erf(rx_expr_44);
^
./censEst.h:591:14: warning: unused variable 'rx_expr_49' [-Wunused-variable]
double rx_expr_49 = erf(rx_expr_46);
^
./censEst.h:517:12: warning: unused variable 'rx_expr_29' [-Wunused-variable]
double rx_expr_29 = erf(rx_expr_26);
^
./censEst.h:518:12: warning: unused variable 'rx_expr_30' [-Wunused-variable]
double rx_expr_30 = erf(rx_expr_28);
^
./censEst.h:714:14: warning: unused variable 'rx_expr_34' [-Wunused-variable]
double rx_expr_34 = erf(rx_expr_31);
^
./censEst.h:679:12: warning: unused variable 'rx_expr_18' [-Wunused-variable]
double rx_expr_18 = erf(rx_expr_17);
^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c expandNlme.cpp -o expandNlme.o
10 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c npde.cpp -o npde.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c shrink.cpp -o shrink.o
In file included from saem.cpp:14:
./censEst.h:392:16: warning: unused variable 'rx_expr_31' [-Wunused-variable]
double rx_expr_31 = erf(rx_expr_25);
^
./censEst.h:351:14: warning: unused variable 'rx_expr_21' [-Wunused-variable]
double rx_expr_21 = erf(rx_expr_18);
^
./censEst.h:472:16: warning: unused variable 'rx_expr_31' [-Wunused-variable]
double rx_expr_31 = erf(rx_expr_25);
^
./censEst.h:431:14: warning: unused variable 'rx_expr_21' [-Wunused-variable]
double rx_expr_21 = erf(rx_expr_18);
^
./censEst.h:590:14: warning: unused variable 'rx_expr_48' [-Wunused-variable]
double rx_expr_48 = erf(rx_expr_44);
^
./censEst.h:591:14: warning: unused variable 'rx_expr_49' [-Wunused-variable]
double rx_expr_49 = erf(rx_expr_46);
^
./censEst.h:517:12: warning: unused variable 'rx_expr_29' [-Wunused-variable]
double rx_expr_29 = erf(rx_expr_26);
^
./censEst.h:518:12: warning: unused variable 'rx_expr_30' [-Wunused-variable]
double rx_expr_30 = erf(rx_expr_28);
^
./censEst.h:714:14: warning: unused variable 'rx_expr_34' [-Wunused-variable]
double rx_expr_34 = erf(rx_expr_31);
^
./censEst.h:679:12: warning: unused variable 'rx_expr_18' [-Wunused-variable]
double rx_expr_18 = erf(rx_expr_17);
^
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c ires.cpp -o ires.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c res.cpp -o res.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c cwres.cpp -o cwres.o
res.cpp:11:7: warning: unused variable 'idSize' [-Wunused-variable]
int idSize = ID.size();
^
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c censResid.cpp -o censResid.o
10 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c cholse.cpp -o cholse.o
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c neldermead.cpp -o neldermead.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c resid.cpp -o resid.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c slice.cpp -o slice.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExportMod.cpp -o RcppExportMod.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c rxcmp.cpp -o rxcmp.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include" -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -DARMA_DONT_USE_OPENMP -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c vaeEncoder.cpp -o vaeEncoder.o
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/nlmixr2est.h:7:
In file included from ../inst/include/nlmixr2est_RcppExports.h:8:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Index count = 0;
^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/nlmixr2est.h:7:
In file included from ../inst/include/nlmixr2est_RcppExports.h:8:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
Index nsuper_et = 0; // Number of relaxed snodes in the original etree
^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/nlmixr2est.h:7:
In file included from ../inst/include/nlmixr2est_RcppExports.h:8:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
Index replacements = 0;
^
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/nlmixr2est.h:7:
In file included from ../inst/include/nlmixr2est_RcppExports.h:8:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
int count = 0;
^
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c init.c -o init.o
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rprintf.c -o rprintf.o
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c merge3.c -o merge3.o
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lbfgsR.c -o lbfgsR.o
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/n1qn1/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lbfgsb3c/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lotri/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppTrust/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/rxode2/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c utilc.c -o utilc.o
5 warnings generated.
10 warnings generated.
19 warnings generated.
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o nlmixr2est.so uninformativeEtas.o nlm.o filterNormalLike.o inner.o odeSwap.o imp.o npCommon.o npag.o npb.o foceiGrad.o shi21.o nearPD.o censEst.o saem.o expandNlme.o npde.o shrink.o ires.o res.o cwres.o censResid.o cholse.o neldermead.o resid.o slice.o RcppExportMod.o RcppExports.o rxcmp.o vaeEncoder.o init.o rprintf.o merge3.o lbfgsR.o utilc.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
ld: warning: could not create compact unwind for ___emutls_get_address: does not use standard frame
ld: warning: could not create compact unwind for _allocate_tramp_ctrl: does not use standard frame
ld: warning: could not create compact unwind for ___gcc_nested_func_ptr_created: does not use standard frame
ld: warning: could not create compact unwind for ___gcc_nested_func_ptr_deleted: does not use standard frame
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.5/nlmixr2est.Rcheck/00LOCK-nlmixr2est/00new/nlmixr2est/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (nlmixr2est)