* installing *source* package ‘natcpp’ ...
** this is package ‘natcpp’ version ‘0.3.2’
** package ‘natcpp’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c cable.cpp -o cable.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c coordinates.cpp -o coordinates.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fast_inside_mesh.cpp -o fast_inside_mesh.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c inside_mesh.cpp -o inside_mesh.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c matrix.cpp -o matrix.o
In file included from RcppExports.cpp:4:
In file included from fast_inside_mesh.cppIn file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h::2518:
In file included from :
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h::29:
25:
In file included from In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:2629:
:
In file included from In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/Sparse::6126:
:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61:273:
:/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h13::273 :warning: 13variable 'count' set but not used [-Wunused-but-set-variable]
: Index count = 0;
^warning:
variable 'count' set but not used [-Wunused-but-set-variable]
Index count = 0;
^
In file included from fast_inside_mesh.cppIn file included from :18RcppExports.cpp:
:In file included from 4/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h:
:In file included from 25:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.hIn file included from :/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h25::
29In file included from :
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.hIn file included from :/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/Sparse29::
29In file included from :
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/SparseIn file included from :/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU:2935:
:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU::7835::
9/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:: 78warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]:
9: Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
^warning:
variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h
: Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 79
: ^9
: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.hwarning: :variable 'nsuper_et' set but not used [-Wunused-but-set-variable]79:
9 Index nsuper_et = 0; // Number of relaxed snodes in the original etree :
^warning:
variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
Index nsuper_et = 0; // Number of relaxed snodes in the original etree
^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.hIn file included from :fast_inside_mesh.cpp31::
18In file included from :
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers:In file included from 46/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h:
:/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h25::
72In file included from :/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h10::31 :
warning: In file included from variable 'replacements' set but not used [-Wunused-but-set-variable]/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers
: Index replacements = 0;46
:
^/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h
:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
Index replacements = 0;
^
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c seglist.cpp -o seglist.o
In file included from In file included from fast_inside_mesh.cppRcppExports.cpp::184:
:
In file included from In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h::2525:
:
In file included from In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h::3737:
:
In file included from In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra::4545:
:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h::246246::77:: warning: warning: variable 'count' set but not used [-Wunused-but-set-variable]variable 'count' set but not used [-Wunused-but-set-variable]
int count = 0; int count = 0;
^ ^
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c weighted_jaccard.cpp -o weighted_jaccard.o
5 warnings generated.
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o natcpp.so RcppExports.o cable.o coordinates.o fast_inside_mesh.o inside_mesh.o matrix.o seglist.o weighted_jaccard.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.5/natcpp.Rcheck/00LOCK-natcpp/00new/natcpp/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (natcpp)