* installing *source* package ‘mvabund’ ...
** package ‘mvabund’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 13.0.0 (clang-1300.0.29.30)’
using C++11
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppGSL/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppGSL/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Rinterface.cpp -o Rinterface.o
In file included from Rinterface.cpp:9:
./resampTest.h:426:50: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
~~~~~~~~~~~ ^
./resampTest.h:426:50: note: place parentheses around the '+' expression to silence this warning
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
( )
./resampTest.h:426:50: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
(
./resampTest.h:425:36: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
~~~~~~~~~~~~ ^
./resampTest.h:425:36: note: place parentheses around the '+' expression to silence this warning
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
^
( )
./resampTest.h:425:36: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
^
(
./resampTest.h:433:41: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
~~~~~~~~~~~~ ^
./resampTest.h:433:41: note: place parentheses around the '+' expression to silence this warning
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
^
( )
./resampTest.h:433:41: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
^
(
3 warnings generated.
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppGSL/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c anova.cpp -o anova.o
In file included from anova.cpp:5:
./resampTest.h:426:50: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
~~~~~~~~~~~ ^
./resampTest.h:426:50: note: place parentheses around the '+' expression to silence this warning
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
( )
./resampTest.h:426:50: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
(
./resampTest.h:425:36: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
~~~~~~~~~~~~ ^
./resampTest.h:425:36: note: place parentheses around the '+' expression to silence this warning
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
^
( )
./resampTest.h:425:36: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
^
(
./resampTest.h:433:41: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
~~~~~~~~~~~~ ^
./resampTest.h:433:41: note: place parentheses around the '+' expression to silence this warning
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
^
( )
./resampTest.h:433:41: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
^
(
3 warnings generated.
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppGSL/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c calctest.cpp -o calctest.o
In file included from calctest.cpp:5:
./resampTest.h:426:50: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
~~~~~~~~~~~ ^
./resampTest.h:426:50: note: place parentheses around the '+' expression to silence this warning
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
( )
./resampTest.h:426:50: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
(
./resampTest.h:425:36: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
~~~~~~~~~~~~ ^
./resampTest.h:425:36: note: place parentheses around the '+' expression to silence this warning
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
^
( )
./resampTest.h:425:36: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
^
(
./resampTest.h:433:41: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
~~~~~~~~~~~~ ^
./resampTest.h:433:41: note: place parentheses around the '+' expression to silence this warning
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
^
( )
./resampTest.h:433:41: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
^
(
3 warnings generated.
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppGSL/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c glm.cpp -o glm.o
In file included from glm.cpp:5:
./resampTest.h:426:50: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
~~~~~~~~~~~ ^
./resampTest.h:426:50: note: place parentheses around the '+' expression to silence this warning
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
( )
./resampTest.h:426:50: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
(
./resampTest.h:425:36: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
~~~~~~~~~~~~ ^
./resampTest.h:425:36: note: place parentheses around the '+' expression to silence this warning
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
^
( )
./resampTest.h:425:36: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
^
(
./resampTest.h:433:41: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
~~~~~~~~~~~~ ^
./resampTest.h:433:41: note: place parentheses around the '+' expression to silence this warning
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
^
( )
./resampTest.h:433:41: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
^
(
3 warnings generated.
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppGSL/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c glmtest.cpp -o glmtest.o
In file included from glmtest.cpp:5:
./resampTest.h:426:50: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
~~~~~~~~~~~ ^
./resampTest.h:426:50: note: place parentheses around the '+' expression to silence this warning
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
( )
./resampTest.h:426:50: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
(
./resampTest.h:425:36: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
~~~~~~~~~~~~ ^
./resampTest.h:425:36: note: place parentheses around the '+' expression to silence this warning
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
^
( )
./resampTest.h:425:36: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
^
(
./resampTest.h:433:41: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
~~~~~~~~~~~~ ^
./resampTest.h:433:41: note: place parentheses around the '+' expression to silence this warning
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
^
( )
./resampTest.h:433:41: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
^
(
3 warnings generated.
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppGSL/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c io.cpp -o io.o
In file included from io.cpp:5:
./resampTest.h:426:50: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
~~~~~~~~~~~ ^
./resampTest.h:426:50: note: place parentheses around the '+' expression to silence this warning
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
( )
./resampTest.h:426:50: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
(
./resampTest.h:425:36: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
~~~~~~~~~~~~ ^
./resampTest.h:425:36: note: place parentheses around the '+' expression to silence this warning
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
^
( )
./resampTest.h:425:36: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
^
(
./resampTest.h:433:41: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
~~~~~~~~~~~~ ^
./resampTest.h:433:41: note: place parentheses around the '+' expression to silence this warning
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
^
( )
./resampTest.h:433:41: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
^
(
3 warnings generated.
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppGSL/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rnd.cpp -o rnd.o
In file included from rnd.cpp:37:
./resampTest.h:426:50: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
~~~~~~~~~~~ ^
./resampTest.h:426:50: note: place parentheses around the '+' expression to silence this warning
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
( )
./resampTest.h:426:50: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
(
./resampTest.h:425:36: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
~~~~~~~~~~~~ ^
./resampTest.h:425:36: note: place parentheses around the '+' expression to silence this warning
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
^
( )
./resampTest.h:425:36: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
^
(
./resampTest.h:433:41: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
~~~~~~~~~~~~ ^
./resampTest.h:433:41: note: place parentheses around the '+' expression to silence this warning
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
^
( )
./resampTest.h:433:41: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
^
(
3 warnings generated.
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppGSL/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c simutility.cpp -o simutility.o
In file included from simutility.cpp:5:
./resampTest.h:426:50: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
~~~~~~~~~~~ ^
./resampTest.h:426:50: note: place parentheses around the '+' expression to silence this warning
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
( )
./resampTest.h:426:50: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
(
./resampTest.h:425:36: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
~~~~~~~~~~~~ ^
./resampTest.h:425:36: note: place parentheses around the '+' expression to silence this warning
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
^
( )
./resampTest.h:425:36: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
^
(
./resampTest.h:433:41: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
~~~~~~~~~~~~ ^
./resampTest.h:433:41: note: place parentheses around the '+' expression to silence this warning
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
^
( )
./resampTest.h:433:41: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
^
(
3 warnings generated.
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppGSL/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c summary.cpp -o summary.o
In file included from summary.cpp:5:
./resampTest.h:426:50: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
~~~~~~~~~~~ ^
./resampTest.h:426:50: note: place parentheses around the '+' expression to silence this warning
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
( )
./resampTest.h:426:50: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (n > 1) ? (gsl_sf_lngamma(n + 1) -
^
(
./resampTest.h:425:36: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
~~~~~~~~~~~~ ^
./resampTest.h:425:36: note: place parentheses around the '+' expression to silence this warning
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
^
( )
./resampTest.h:425:36: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (yi < n) ? (n - yi) * log(1 - mui / n)
^
(
./resampTest.h:433:41: warning: operator '?:' has lower precedence than '+'; '+' will be evaluated first [-Wparentheses]
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
~~~~~~~~~~~~ ^
./resampTest.h:433:41: note: place parentheses around the '+' expression to silence this warning
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
^
( )
./resampTest.h:433:41: note: place parentheses around the '?:' expression to evaluate it first
: 0 + (yi < n) ? ((n - yi) * log((n - yi) / (n - mui)))
^
(
3 warnings generated.
clang++ -arch arm64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o mvabund.so RcppExports.o Rinterface.o anova.o calctest.o glm.o glmtest.o io.o rnd.o simutility.o summary.o -L/opt/R/arm64/lib -lgsl -lgslcblas -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.3/mvabund.Rcheck/00LOCK-mvabund/00new/mvabund/libs
** generating debug symbols (dSYM)
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mvabund)