Install log for 'mums2'

* installing *source* package ‘mums2’ ...
** this is package ‘mums2’ version ‘0.1.0’
** package ‘mums2’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c AlphaDiversity.cpp -o AlphaDiversity.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c Annotation.cpp -o Annotation.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c AnnotationController.cpp -o AnnotationController.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c BetaDiversity.cpp -o BetaDiversity.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c BrayCurtisDissimilarity.cpp -o BrayCurtisDissimilarity.o
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c CleanSpectrum.c -o CleanSpectrum.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c CommunityMatrix.cpp -o CommunityMatrix.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c DecomposeMass.cpp -o DecomposeMass.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c DetectNeutralLoses.cpp -o DetectNeutralLoses.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c Distance.cpp -o Distance.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c Diversity.cpp -o Diversity.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c DiversityMetricFactory.cpp -o DiversityMetricFactory.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c FragmentationTree.cpp -o FragmentationTree.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c GreedyHeuristic.cpp -o GreedyHeuristic.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c HammingDistance.cpp -o HammingDistance.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c HumanMetabolomicsDB.cpp -o HumanMetabolomicsDB.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c JaccardDistance.cpp -o JaccardDistance.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ModifiedCosineScore.cpp -o ModifiedCosineScore.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c MolecularFormula.cpp -o MolecularFormula.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c MolecularMakeup.cpp -o MolecularMakeup.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c MorisitahornIndex.cpp -o MorisitahornIndex.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c Rarefaction.cpp -o Rarefaction.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:5:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp.h:27:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/RcppCommon.h:29:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp/r/check_r_headers.h:27:13: warning: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
    #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
            ^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
    #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
            ^
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ReadSpectra.cpp -o ReadSpectra.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ScoringFactory.cpp -o ScoringFactory.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ShannonDiversityIndex.cpp -o ShannonDiversityIndex.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c SimpsonsDiversityIndex.cpp -o SimpsonsDiversityIndex.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c SorensonIndex.cpp -o SorensonIndex.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c SpeciesRichnessDiversity.cpp -o SpeciesRichnessDiversity.o
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c SpectralEntropy.c -o SpectralEntropy.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ThetaycDissimilarity.cpp -o ThetaycDissimilarity.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c alphabet.cpp -o alphabet.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c alphabettextparser.cpp -o alphabettextparser.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c annotateMs2Features.cpp -o annotateMs2Features.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c composedelement.cpp -o composedelement.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c denovo_molecular_formula_prediction.cpp -o denovo_molecular_formula_prediction.o
2 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c distMs2.cpp -o distMs2.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c distributionprobabilityscorer.cpp -o distributionprobabilityscorer.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c diversityCalculations.cpp -o diversityCalculations.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c element.cpp -o element.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c entropy.cpp -o entropy.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c humanMetabolomicsDBController.cpp -o humanMetabolomicsDBController.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c isotopedistribution.cpp -o isotopedistribution.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c moleculesequenceparser.cpp -o moleculesequenceparser.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ms2ms1compare.cpp -o ms2ms1compare.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c progressBar.cpp -o progressBar.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c realmassdecomposer.cpp -o realmassdecomposer.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c spectrumReaders.cpp -o spectrumReaders.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c standardmoleculesequenceparser.cpp -o standardmoleculesequenceparser.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-Utils.cpp -o test-Utils.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-alpha_diversity.cpp -o test-alpha_diversity.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-annotation_controller.cpp -o test-annotation_controller.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-beta_diversity.cpp -o test-beta_diversity.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-cpp_matrix.cpp -o test-cpp_matrix.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-diversity_metric_function.cpp -o test-diversity_metric_function.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-fragmentation_tree.cpp -o test-fragmentation_tree.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-greedy_heuristic.cpp -o test-greedy_heuristic.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-molecular_formula.cpp -o test-molecular_formula.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-molecular_formula_similarity.cpp -o test-molecular_formula_similarity.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-molecular_makeup.cpp -o test-molecular_makeup.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-rarefaction.cpp -o test-rarefaction.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-read_spectra.cpp -o test-read_spectra.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-runner.cpp -o test-runner.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/sitmo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppThread/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c weights.cpp -o weights.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o mums2.so AlphaDiversity.o Annotation.o AnnotationController.o BetaDiversity.o BrayCurtisDissimilarity.o CleanSpectrum.o CommunityMatrix.o DecomposeMass.o DetectNeutralLoses.o Distance.o Diversity.o DiversityMetricFactory.o FragmentationTree.o GreedyHeuristic.o HammingDistance.o HumanMetabolomicsDB.o JaccardDistance.o ModifiedCosineScore.o MolecularFormula.o MolecularMakeup.o MorisitahornIndex.o Rarefaction.o RcppExports.o ReadSpectra.o ScoringFactory.o ShannonDiversityIndex.o SimpsonsDiversityIndex.o SorensonIndex.o SpeciesRichnessDiversity.o SpectralEntropy.o ThetaycDissimilarity.o alphabet.o alphabettextparser.o annotateMs2Features.o composedelement.o denovo_molecular_formula_prediction.o distMs2.o distributionprobabilityscorer.o diversityCalculations.o element.o entropy.o humanMetabolomicsDBController.o isotopedistribution.o moleculesequenceparser.o ms2ms1compare.o progressBar.o realmassdecomposer.o spectrumReaders.o standardmoleculesequenceparser.o test-Utils.o test-alpha_diversity.o test-annotation_controller.o test-beta_diversity.o test-cpp_matrix.o test-diversity_metric_function.o test-fragmentation_tree.o test-greedy_heuristic.o test-molecular_formula.o test-molecular_formula_similarity.o test-molecular_makeup.o test-rarefaction.o test-read_spectra.o test-runner.o weights.o -lpthread -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.5/mums2.Rcheck/00LOCK-mums2/00new/mums2/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mums2)