• using R version 4.4.1 (2024-06-14)
• using platform: aarch64-apple-darwin20
• R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 12.2.0
• running under: macOS Ventura 13.4
• using session charset: UTF-8
• checking for file ‘mcmc/DESCRIPTION’ ... OK
• this is package ‘mcmc’ version ‘0.9-8’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘mcmc’ can be installed ... [2s/3s] OK See the install log for details.
• used C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
• used SDK: ‘MacOSX11.3.sdk’
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [1s/1s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking include directives in Makefiles ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/1s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [11s/13s] OK   Running ‘accept-batch.R’ [0s/0s]   Comparing ‘accept-batch.Rout’ to ‘accept-batch.Rout.save’ ... OK   Running ‘circle.R’ [0s/0s]   Comparing ‘circle.Rout’ to ‘circle.Rout.save’ ... OK   Running ‘initseq.R’ [1s/1s]   Comparing ‘initseq.Rout’ to ‘initseq.Rout.save’ ... OK   Running ‘isotropic.R’ [0s/0s]   Comparing ‘isotropic.Rout’ to ‘isotropic.Rout.save’ ... OK   Running ‘logit.R’ [0s/0s]   Comparing ‘logit.Rout’ to ‘logit.Rout.save’ ... OK   Running ‘logitbat.R’ [0s/0s]   Comparing ‘logitbat.Rout’ to ‘logitbat.Rout.save’ ... OK   Running ‘logitfun.R’ [0s/0s]   Comparing ‘logitfun.Rout’ to ‘logitfun.Rout.save’ ... OK   Running ‘logitfunarg.R’ [0s/0s]   Comparing ‘logitfunarg.Rout’ to ‘logitfunarg.Rout.save’ ... OK   Running ‘logitidx.R’ [0s/0s]   Comparing ‘logitidx.Rout’ to ‘logitidx.Rout.save’ ... OK   Running ‘logitlogidx.R’ [0s/0s]   Comparing ‘logitlogidx.Rout’ to ‘logitlogidx.Rout.save’ ... OK   Running ‘logitmat.R’ [0s/0s]   Comparing ‘logitmat.Rout’ to ‘logitmat.Rout.save’ ... OK   Running ‘logitnegidx.R’ [0s/0s]   Comparing ‘logitnegidx.Rout’ to ‘logitnegidx.Rout.save’ ... OK   Running ‘logitsub.R’ [0s/0s]   Comparing ‘logitsub.Rout’ to ‘logitsub.Rout.save’ ... OK   Running ‘logitsubbat.R’ [0s/0s]   Comparing ‘logitsubbat.Rout’ to ‘logitsubbat.Rout.save’ ... OK   Running ‘logitvec.R’ [0s/0s]   Comparing ‘logitvec.Rout’ to ‘logitvec.Rout.save’ ... OK   Running ‘morph.R’ [0s/0s]   Comparing ‘morph.Rout’ to ‘morph.Rout.save’ ... OK   Running ‘morph.metrop.R’ [0s/0s]   Comparing ‘morph.metrop.Rout’ to ‘morph.metrop.Rout.save’ ... OK   Running ‘morphtoo.R’ [1s/1s]   Comparing ‘morphtoo.Rout’ to ‘morphtoo.Rout.save’ ... OK   Running ‘saveseed.R’ [0s/0s]   Comparing ‘saveseed.Rout’ to ‘saveseed.Rout.save’ ... OK   Running ‘saveseedmorph.R’ [0s/0s]   Comparing ‘saveseedmorph.Rout’ to ‘saveseedmorph.Rout.save’ ... OK   Running ‘temp-par-witch.R’ [1s/1s]   Comparing ‘temp-par-witch.Rout’ to ‘temp-par-witch.Rout.save’ ... OK   Running ‘temp-par.R’ [1s/1s]   Comparing ‘temp-par.Rout’ to ‘temp-par.Rout.save’ ... OK   Running ‘temp-ser-witch.R’ [1s/1s]   Comparing ‘temp-ser-witch.Rout’ to ‘temp-ser-witch.Rout.save’ ... OK   Running ‘temp-ser.R’ [1s/1s]   Comparing ‘temp-ser.Rout’ to ‘temp-ser.Rout.save’ ... OK   Running ‘zero-error.R’ [0s/0s]   Comparing ‘zero-error.Rout’ to ‘zero-error.Rout.save’ ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [38s/43s] OK
• checking PDF version of manual ... [4s/4s] OK
• DONE Status: OK
• using check arguments '--no-clean-on-error '