* installing *source* package ‘lolog’ ...
** package ‘lolog’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppModule.cpp -o RcppModule.o
In file included from RcppModule.cpp:6:
In file included from ../inst/include/LatentOrderLikelihood.h:4:
In file included from ../inst/include/Model.h:6:
../inst/include/StatController.h:58:18: warning: instantiation of variable 'lolog::StatController<lolog::Undirected>::statMapPtr' required here, but no definition is available [-Wundefined-var-template]
pS = statMapPtr->at(name);
^
../inst/include/Model.h:371:60: note: in instantiation of member function 'lolog::StatController<lolog::Undirected>::getStat' requested here
AbstractStat<Engine>* ps = StatController<Engine>::getStat(name, params);
^
RcppModule.cpp:81:48: note: in instantiation of member function 'lolog::Model<lolog::Undirected>::addStatistic' requested here
.method("addStatistic",&Model<Undirected>::addStatistic)
^
../inst/include/StatController.h:35:23: note: forward declaration of template entity is here
static StatMapPtr statMapPtr;
^
../inst/include/StatController.h:58:18: note: add an explicit instantiation declaration to suppress this warning if 'lolog::StatController<lolog::Undirected>::statMapPtr' is explicitly instantiated in another translation unit
pS = statMapPtr->at(name);
^
../inst/include/StatController.h:74:18: warning: instantiation of variable 'lolog::StatController<lolog::Undirected>::offsetMapPtr' required here, but no definition is available [-Wundefined-var-template]
pS = offsetMapPtr->at(name);
^
../inst/include/Model.h:384:62: note: in instantiation of member function 'lolog::StatController<lolog::Undirected>::getOffset' requested here
AbstractOffset<Engine>* ps = StatController<Engine>::getOffset(name, params);
^
RcppModule.cpp:82:45: note: in instantiation of member function 'lolog::Model<lolog::Undirected>::addOffset' requested here
.method("addOffset",&Model<Undirected>::addOffset)
^
../inst/include/StatController.h:36:25: note: forward declaration of template entity is here
static OffsetMapPtr offsetMapPtr;
^
../inst/include/StatController.h:74:18: note: add an explicit instantiation declaration to suppress this warning if 'lolog::StatController<lolog::Undirected>::offsetMapPtr' is explicitly instantiated in another translation unit
pS = offsetMapPtr->at(name);
^
../inst/include/StatController.h:58:18: warning: instantiation of variable 'lolog::StatController<lolog::Directed>::statMapPtr' required here, but no definition is available [-Wundefined-var-template]
pS = statMapPtr->at(name);
^
../inst/include/Model.h:371:60: note: in instantiation of member function 'lolog::StatController<lolog::Directed>::getStat' requested here
AbstractStat<Engine>* ps = StatController<Engine>::getStat(name, params);
^
RcppModule.cpp:98:46: note: in instantiation of member function 'lolog::Model<lolog::Directed>::addStatistic' requested here
.method("addStatistic",&Model<Directed>::addStatistic)
^
../inst/include/StatController.h:35:23: note: forward declaration of template entity is here
static StatMapPtr statMapPtr;
^
../inst/include/StatController.h:58:18: note: add an explicit instantiation declaration to suppress this warning if 'lolog::StatController<lolog::Directed>::statMapPtr' is explicitly instantiated in another translation unit
pS = statMapPtr->at(name);
^
../inst/include/StatController.h:74:18: warning: instantiation of variable 'lolog::StatController<lolog::Directed>::offsetMapPtr' required here, but no definition is available [-Wundefined-var-template]
pS = offsetMapPtr->at(name);
^
../inst/include/Model.h:384:62: note: in instantiation of member function 'lolog::StatController<lolog::Directed>::getOffset' requested here
AbstractOffset<Engine>* ps = StatController<Engine>::getOffset(name, params);
^
RcppModule.cpp:99:43: note: in instantiation of member function 'lolog::Model<lolog::Directed>::addOffset' requested here
.method("addOffset",&Model<Directed>::addOffset)
^
../inst/include/StatController.h:36:25: note: forward declaration of template entity is here
static OffsetMapPtr offsetMapPtr;
^
../inst/include/StatController.h:74:18: note: add an explicit instantiation declaration to suppress this warning if 'lolog::StatController<lolog::Directed>::offsetMapPtr' is explicitly instantiated in another translation unit
pS = offsetMapPtr->at(name);
^
4 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c StatController.cpp -o StatController.o
In file included from StatController.cpp:3:
../inst/include/Stats.h:1174:16: warning: unused variable 'fromDeg' [-Wunused-variable]
double fromDeg;
^
../inst/include/Stats.h:1173:16: warning: unused variable 'toDeg' [-Wunused-variable]
double toDeg;
^
../inst/include/Stats.h:1185:16: warning: variable 'deg' set but not used [-Wunused-but-set-variable]
double deg = net.degree(from);
^
../inst/include/Stats.h:2457:16: warning: unused variable 'sdegs' [-Wunused-variable]
double sdegs = 0.0;
^
../inst/include/Stats.h:2450:16: warning: unused variable 'netSize' [-Wunused-variable]
double netSize = actorIndex + 1.0;
^
../inst/include/Stats.h:2451:16: warning: unused variable 'totDegree' [-Wunused-variable]
double totDegree = (net.nEdges() - hasEdge) * 2.0;
^
../inst/include/Stats.h:2791:12: warning: unused variable 'addingEdge' [-Wunused-variable]
bool addingEdge = !net.hasEdge(from,to);
^
../inst/include/Stats.h:2976:10: warning: unused variable 'addingEdge' [-Wunused-variable]
bool addingEdge = !net.hasEdge(from,to);
^
../inst/include/Stats.h:2458:26: warning: unused variable 'fit' [-Wunused-variable]
NeighborIterator fit = net.begin(order[actorIndex]);
^
../inst/include/Stat.h:247:14: note: in instantiation of member function 'lolog::SharedNbrs<lolog::Undirected>::dyadUpdate' requested here
stat.dyadUpdate(net,from,to,order,actorIndex);
^
../inst/include/Stat.h:243:9: note: in instantiation of member function 'lolog::Stat<lolog::Undirected, lolog::SharedNbrs<lolog::Undirected>>::dyadUpdate' requested here
dyadUpdate(net,from,to,order,actorIndex);
^
../inst/include/Stat.h:169:5: note: in instantiation of member function 'lolog::Stat<lolog::Undirected, lolog::SharedNbrs<lolog::Undirected>>::vDyadUpdate' requested here
Stat() : stat(){}
^
StatController.cpp:86:42: note: in instantiation of member function 'lolog::Stat<lolog::Undirected, lolog::SharedNbrs<lolog::Undirected>>::Stat' requested here
registerStatistic( UndirStatPtr( new UndirectedSharedNbrs() ) );
^
In file included from StatController.cpp:3:
../inst/include/Stats.h:2459:26: warning: unused variable 'fend' [-Wunused-variable]
NeighborIterator fend = net.end(order[actorIndex]);
^
10 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c main.cpp -o main.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test_BinaryNet.cpp -o test_BinaryNet.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test_Constraints.cpp -o test_Constraints.o
In file included from test_Constraints.cpp:7:
../inst/include/Stats.h:1185:16: warning: variable 'deg' set but not used [-Wunused-but-set-variable]
double deg = net.degree(from);
^
../inst/include/Stats.h:1173:16: warning: unused variable 'toDeg' [-Wunused-variable]
double toDeg;
^
../inst/include/Stats.h:1174:16: warning: unused variable 'fromDeg' [-Wunused-variable]
double fromDeg;
^
../inst/include/Stats.h:2451:16: warning: unused variable 'totDegree' [-Wunused-variable]
double totDegree = (net.nEdges() - hasEdge) * 2.0;
^
../inst/include/Stats.h:2450:16: warning: unused variable 'netSize' [-Wunused-variable]
double netSize = actorIndex + 1.0;
^
../inst/include/Stats.h:2457:16: warning: unused variable 'sdegs' [-Wunused-variable]
double sdegs = 0.0;
^
../inst/include/Stats.h:2791:12: warning: unused variable 'addingEdge' [-Wunused-variable]
bool addingEdge = !net.hasEdge(from,to);
^
../inst/include/Stats.h:2976:10: warning: unused variable 'addingEdge' [-Wunused-variable]
bool addingEdge = !net.hasEdge(from,to);
^
8 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test_LatentOrderLikelhood.cpp -o test_LatentOrderLikelhood.o
In file included from test_LatentOrderLikelhood.cpp:5:
../inst/include/Stats.h:1185:16: warning: variable 'deg' set but not used [-Wunused-but-set-variable]
double deg = net.degree(from);
^
../inst/include/Stats.h:1173:16: warning: unused variable 'toDeg' [-Wunused-variable]
double toDeg;
^
../inst/include/Stats.h:1174:16: warning: unused variable 'fromDeg' [-Wunused-variable]
double fromDeg;
^
../inst/include/Stats.h:2451:16: warning: unused variable 'totDegree' [-Wunused-variable]
double totDegree = (net.nEdges() - hasEdge) * 2.0;
^
../inst/include/Stats.h:2450:16: warning: unused variable 'netSize' [-Wunused-variable]
double netSize = actorIndex + 1.0;
^
../inst/include/Stats.h:2457:16: warning: unused variable 'sdegs' [-Wunused-variable]
double sdegs = 0.0;
^
../inst/include/Stats.h:2791:12: warning: unused variable 'addingEdge' [-Wunused-variable]
bool addingEdge = !net.hasEdge(from,to);
^
../inst/include/Stats.h:2976:10: warning: unused variable 'addingEdge' [-Wunused-variable]
bool addingEdge = !net.hasEdge(from,to);
^
test_LatentOrderLikelhood.cpp:108:12: warning: unused variable 'llik' [-Wunused-variable]
double llik = model.logLik();
^
9 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test_ParamParser.cpp -o test_ParamParser.o
test_ParamParser.cpp:10:5: warning: unused label 'Rcpp' [-Wunused-label]
Rcpp:List params = Rcpp::List::create(1, Rcpp::Named("a")=2, Rcpp::Named("b") = "ss");
^~~~~
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test_Stats.cpp -o test_Stats.o
In file included from test_Stats.cpp:4:
../inst/include/Stats.h:1185:16: warning: variable 'deg' set but not used [-Wunused-but-set-variable]
double deg = net.degree(from);
^
../inst/include/Stats.h:1173:16: warning: unused variable 'toDeg' [-Wunused-variable]
double toDeg;
^
../inst/include/Stats.h:1174:16: warning: unused variable 'fromDeg' [-Wunused-variable]
double fromDeg;
^
../inst/include/Stats.h:2451:16: warning: unused variable 'totDegree' [-Wunused-variable]
double totDegree = (net.nEdges() - hasEdge) * 2.0;
^
../inst/include/Stats.h:2450:16: warning: unused variable 'netSize' [-Wunused-variable]
double netSize = actorIndex + 1.0;
^
../inst/include/Stats.h:2457:16: warning: unused variable 'sdegs' [-Wunused-variable]
double sdegs = 0.0;
^
../inst/include/Stats.h:2791:12: warning: unused variable 'addingEdge' [-Wunused-variable]
bool addingEdge = !net.hasEdge(from,to);
^
../inst/include/Stats.h:2976:10: warning: unused variable 'addingEdge' [-Wunused-variable]
bool addingEdge = !net.hasEdge(from,to);
^
8 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c tests.cpp -o tests.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o lolog.so RcppExports.o RcppModule.o StatController.o main.o test_BinaryNet.o test_Constraints.o test_LatentOrderLikelhood.o test_ParamParser.o test_Stats.o tests.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.3/lolog.Rcheck/00LOCK-lolog/00new/lolog/libs
** generating debug symbols (dSYM)
** R
** data
** inst
** byte-compile and prepare package for lazy loading
in method for ‘[’ with signature ‘"Rcpp_DirectedNet"’: no definition for class “Rcpp_DirectedNet”
in method for ‘[’ with signature ‘"Rcpp_UndirectedNet"’: no definition for class “Rcpp_UndirectedNet”
in method for ‘[<-’ with signature ‘"Rcpp_DirectedNet"’: no definition for class “Rcpp_DirectedNet”
in method for ‘[<-’ with signature ‘"Rcpp_UndirectedNet"’: no definition for class “Rcpp_UndirectedNet”
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lolog)