* installing *source* package ‘jmotif’ ...
** this is package ‘jmotif’ version ‘1.3.0’
** package ‘jmotif’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c discord.cpp -o discord.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c distance.cpp -o distance.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c hot-sax.cpp -o hot-sax.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c jmotif.cpp -o jmotif.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c paa.cpp -o paa.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c repair.cpp -o repair.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c repair_digram.cpp -o repair_digram.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c repair_guard.cpp -o repair_guard.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c repair_priority_queue.cpp -o repair_priority_queue.o
repair.cpp:119:7: warning: variable 'i' set but not used [-Wunused-but-set-variable]
int i=0;
^
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c repair_rule.cpp -o repair_rule.o
In file included from repair.cpp:1:
In file included from ../inst/include/jmotif.h:5:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/vector:276:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__bit_reference:15:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/algorithm:643:
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1686:86: warning: destructor called on non-final 'repair_symbol' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
_LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_INLINE_VISIBILITY void destroy(pointer __p) {__p->~_Tp();}
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1578:21: note: in instantiation of member function 'std::allocator<repair_symbol>::destroy' requested here
__a.destroy(__p);
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1419:14: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<repair_symbol>>::__destroy<repair_symbol>' requested here
{__destroy(__has_destroy<allocator_type, _Tp*>(), __a, __p);}
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/deque:1249:25: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<repair_symbol>>::destroy<repair_symbol>' requested here
__alloc_traits::destroy(__a, _VSTD::addressof(*__i));
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/deque:1186:5: note: in instantiation of member function 'std::__deque_base<repair_symbol, std::allocator<repair_symbol>>::clear' requested here
clear();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/deque:1268:28: note: in instantiation of member function 'std::__deque_base<repair_symbol, std::allocator<repair_symbol>>::~__deque_base' requested here
class _LIBCPP_TEMPLATE_VIS deque
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1686:92: note: qualify call to silence this warning
_LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_INLINE_VISIBILITY void destroy(pointer __p) {__p->~_Tp();}
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1686:86: warning: destructor called on non-final 'repair_guard' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
_LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_INLINE_VISIBILITY void destroy(pointer __p) {__p->~_Tp();}
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1578:21: note: in instantiation of member function 'std::allocator<repair_guard>::destroy' requested here
__a.destroy(__p);
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1419:14: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<repair_guard>>::__destroy<repair_guard>' requested here
{__destroy(__has_destroy<allocator_type, _Tp*>(), __a, __p);}
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/deque:1249:25: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<repair_guard>>::destroy<repair_guard>' requested here
__alloc_traits::destroy(__a, _VSTD::addressof(*__i));
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/deque:1186:5: note: in instantiation of member function 'std::__deque_base<repair_guard, std::allocator<repair_guard>>::clear' requested here
clear();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/deque:1268:28: note: in instantiation of member function 'std::__deque_base<repair_guard, std::allocator<repair_guard>>::~__deque_base' requested here
class _LIBCPP_TEMPLATE_VIS deque
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1686:92: note: qualify call to silence this warning
_LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_INLINE_VISIBILITY void destroy(pointer __p) {__p->~_Tp();}
^
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c repair_symbol.cpp -o repair_symbol.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c repair_symbol_record.cpp -o repair_symbol_record.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rra.cpp -o rra.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sax-vsm.cpp -o sax-vsm.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sax.cpp -o sax.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c string.cpp -o string.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c utils.cpp -o utils.o
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c visit_registry.cpp -o visit_registry.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include/" -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c znorm.cpp -o znorm.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o jmotif.so RcppExports.o discord.o distance.o hot-sax.o jmotif.o paa.o repair.o repair_digram.o repair_guard.o repair_priority_queue.o repair_rule.o repair_symbol.o repair_symbol_record.o rra.o sax-vsm.o sax.o string.o utils.o visit_registry.o znorm.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.5/jmotif.Rcheck/00LOCK-jmotif/00new/jmotif/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (jmotif)