• using R version 4.5.2 Patched (2026-01-31 r89382)
• using platform: aarch64-apple-darwin20
• R was compiled by     Apple clang version 16.0.0 (clang-1600.0.26.6)     GNU Fortran (GCC) 14.2.0
• running under: macOS Ventura 13.7.8
• using session charset: UTF-8
• checking for file ‘ivdtools/DESCRIPTION’ ... OK
• this is package ‘ivdtools’ version ‘0.1.2’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘ivdtools’ can be installed ... [5s/6s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [6s/6s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [12s/12s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [7s/8s] ERROR   Running ‘testthat.R’ [7s/8s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(ivdtools)      Attaching package: 'ivdtools'      The following object is masked from 'package:testthat':          describe      The following object is masked from 'package:stats':          profile      The following object is masked from 'package:base':          kappa      >   > test_check("ivdtools")      Correlation     Method: pearson     r = 0.9999, 95% CI [0.9995, 1.0000]     p-value: < 2.2e-16     n = 12      Regression     Method: OLS     Intercept = -0.1079 (SE = 0.1590)     Slope = 1.0036 (SE = 0.0052)     Intercept 95% CI: [-0.4622, 0.2463]     Slope 95% CI: [0.9920, 1.0152]       H0: slope = 1 -> t = 0.6864, p = 0.5081       slope not significantly different from 1 (CI contains 1)     R-squared = 0.9997     Sigma = 0.2248     n = 12      Bland-Altman     Type: difference     Y-axis: candidate - reference     X-axis: Mean of candidate and reference     n = 12        Mean diff: 0.0083     SD diff: 0.2193     95% LoA: [-0.4215, 0.4382]        95% CI for LoA:       Lower LoA: [-0.6667, -0.1764]       Upper LoA: [0.1930, 0.6834]      AUC Table     Column AUC 95% CI Direction     ------------------------------------------------------------     marker 1.0000 [ NA, NA] geq         Saving _problems/test-sensitivity-27.R   Saving _problems/test-sensitivity-32.R   Saving _problems/test-sensitivity-34.R   Saving _problems/test-sensitivity-110.R   [ FAIL 4 | WARN 0 | SKIP 0 | PASS 330 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-sensitivity.R:27:3'): full pipeline: LoB / LoD / LoQ match EP17-A2 and analytic values ──   Expected `as.numeric(object)` to equal `as.numeric(expected)`.   Differences:     `actual`: 0.219   `expected`: 0.198      Backtrace:       ▆    1. └─ivdtools:::expect_num_equal(res$lod, lod_ana, tolerance = 1e-06) at test-sensitivity.R:27:3    2. └─testthat::expect_equal(...) at ./helper-testing.R:8:3   ── Failure ('test-sensitivity.R:32:3'): full pipeline: LoB / LoD / LoQ match EP17-A2 and analytic values ──   Expected `as.numeric(object)` to equal `as.numeric(expected)`.   Differences:     `actual`: 0.5086   `expected`: 0.5000      Backtrace:       ▆    1. └─ivdtools:::expect_num_equal(res$loq, 0.5, tolerance = 0.001) at test-sensitivity.R:32:3    2. └─testthat::expect_equal(...) at ./helper-testing.R:8:3   ── Failure ('test-sensitivity.R:34:3'): full pipeline: LoB / LoD / LoQ match EP17-A2 and analytic values ──   Expected `res$model` to equal "Model_4".   Differences:   `actual`: "Model_7"   `expected`: "Model_4"      ── Failure ('test-sensitivity.R:110:3'): no-blank data returns only LoQ ────────   Expected `as.numeric(object)` to equal `as.numeric(expected)`.   Differences:     `actual`: 0.5086   `expected`: 0.5000      Backtrace:       ▆    1. └─ivdtools:::expect_num_equal(res$loq, 0.5, tolerance = 0.001) at test-sensitivity.R:110:3    2. └─testthat::expect_equal(...) at ./helper-testing.R:8:3      [ FAIL 4 | WARN 0 | SKIP 0 | PASS 330 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [4s/4s] OK
• checking PDF version of manual ... [3s/3s] OK
• DONE

Status: 1 ERROR