* using log directory ‘/Volumes/Builds/packages/big-sur-arm64/results/4.4/fluxfixer.Rcheck’ * using R version 4.4.3 Patched (2026-02-12 r89409) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.7.8 * using session charset: UTF-8 * checking for file ‘fluxfixer/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘fluxfixer’ version ‘1.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘fluxfixer’ can be installed ... [1s/1s] OK See 'https://www.r-project.org/nosvn/R.check/r-oldrel-macos-arm64/fluxfixer-00install.html' for details. * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [1s/1s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [5s/3s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [75s/47s] ERROR Running ‘testthat.R’ [75s/47s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(fluxfixer) > > test_check("fluxfixer") --- dTmax calculation by the SP method started --- dTmax calculation by the SP method finished --- dTmax calculation by the PD method started | | | 0% | |== | 3% | |===== | 7% | |======= | 10% | |========= | 13% | |============ | 17% | |============== | 20% | |================ | 23% | |=================== | 27% | |===================== | 30% | |======================= | 33% | |========================== | 37% | |============================ | 40% | |============================== | 43% | |================================= | 47% | 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--- dTmax calculation by the PD method finished --- dTmax calculation by the MW and DR methods started | | | 0% | |== | 3% | |===== | 7% | |======= | 10% | |========= | 13% | |============ | 17% | |============== | 20% | |================ | 23% | |=================== | 27% | |===================== | 30% | |======================= | 33% | |========================== | 37% | |============================ | 40% | |============================== | 43% | |================================= | 47% | |=================================== | 50% | |===================================== | 53% | |======================================== | 57% | |========================================== | 60% | |============================================ | 63% | |=============================================== | 67% | |================================================= | 70% | |=================================================== | 73% | |====================================================== | 77% | 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|==================================================================== | 97% | |======================================================================| 100% --- dTmax calculation by the PD and ED methods finished --- dTmax calculation by the MW and DR methods started | | | 0% | |== | 3% | |===== | 7% | |======= | 10% | |========= | 13% | |============ | 17% | |============== | 20% | |================ | 23% | |=================== | 27% | |===================== | 30% | |======================= | 33% | |========================== | 37% | |============================ | 40% | |============================== | 43% | |================================= | 47% | |=================================== | 50% | |===================================== | 53% | |======================================== | 57% | |========================================== | 60% | |============================================ | 63% | |=============================================== | 67% | |================================================= | 70% | |=================================================== | 73% | |====================================================== | 77% | |======================================================== | 80% | |========================================================== | 83% | |============================================================= | 87% | |=============================================================== | 90% | |================================================================= | 93% | |==================================================================== | 97% | |======================================================================| 100% --- dTmax calculation by the MW and DR methods finished --- dTmax time series aggregation started --- dTmax time series aggregation finished Zero-flow condition estimation finished --- MSE: Mean square error for out-of-bag data --- Hyperparameter set: [m_try, min_nodesize, subsample] --- MSE: 0.1155032912, Hyperparameter set: [2, 5, 0.1] --- MSE: 0.1157711388, Hyperparameter set: [3, 5, 0.1] Random forest outlier detection started --- Hyperparameter optimization using grid search started --- MSE: Mean square error for out-of-bag data --- Hyperparameter set: [m_try, min_nodesize, subsample] --- MSE: 0.116118315, Hyperparameter set: [2, 5, 0.1] --- MSE: 0.1164037447, Hyperparameter set: [3, 5, 0.1] --- Optimal hyperparameter set: [2, 5, 0.1] --- Hyperparameter optimization using grid search finished --- Random forest construction started --- Random forest construction finished Random forest outlier detection finished Random forest-based gap-filling started --- Hyperparameter optimization using grid search started --- MSE: Mean square error for out-of-bag data --- Hyperparameter set: [m_try, min_nodesize, subsample] --- MSE: 0.1176580164, Hyperparameter set: [2, 5, 1] --- MSE: 0.1187078861, Hyperparameter set: [3, 5, 1] --- Optimal hyperparameter set: [2, 5, 1] --- Hyperparameter optimization using grid search finished --- Random forest construction started --- Random forest construction finished Random forest-based gap-filling finished Saving _problems/test-remove_statistical_outlier-32.R Z-score outlier detection started --- 5 Z-score outliers were detected --- 1 Z-score outlier was detected --- No Z-score outlier was detected Z-score outlier detection finished Time series retrieval started --- Signal damping correction was not applied --- Detrending was not applied Time series retrieval finished *** Fluxfixer started running *** Manual error value removal was not applied Absolute limits test finished Short-term drift correction finished High frequency noise filtering was not applied Z-score outlier detection started --- 4 Z-score outliers were detected --- No Z-score outlier was detected Z-score outlier detection finished Random forest outlier detection started --- Hyperparameter optimization using grid search started --- MSE: Mean square error for out-of-bag data --- Hyperparameter set: [m_try, min_nodesize, subsample] --- MSE: 0.0738599585, Hyperparameter set: [2, 5, 0.1] --- MSE: 0.0728341783, Hyperparameter set: [3, 5, 0.1] --- MSE: 0.0722721358, Hyperparameter set: [4, 5, 0.1] --- MSE: 0.0723118997, Hyperparameter set: [5, 5, 0.1] --- MSE: 0.0727282818, Hyperparameter set: [6, 5, 0.1] --- Optimal hyperparameter set: [4, 5, 0.1] --- Hyperparameter optimization using grid search finished --- Random forest construction started --- Random forest construction finished Random forest outlier detection finished Reference value definition started --- Reference average of target time series: 11.4773826234913 --- Reference standard deviation of target time series: 1.66431731873025 Reference value definition finished Random forest-based gap-filling started --- Hyperparameter optimization using grid search started --- MSE: Mean square error for out-of-bag data --- Hyperparameter set: [m_try, min_nodesize, subsample] --- MSE: 0.0321590219, Hyperparameter set: [2, 5, 1] --- MSE: 0.0319488318, Hyperparameter set: [3, 5, 1] --- MSE: 0.0322191353, Hyperparameter set: [4, 5, 1] --- MSE: 0.0324191707, Hyperparameter set: [5, 5, 1] --- MSE: 0.032595063, Hyperparameter set: [6, 5, 1] --- Optimal hyperparameter set: [3, 5, 1] --- Hyperparameter optimization using grid search finished --- Random forest construction started --- Random forest construction finished Random forest-based gap-filling finished Time series retrieval started --- Signal damping correction was not applied --- Detrending finished Time series retrieval finished Quality-control flag determination finished Zero-flow condition estimation started --- dTmax calculation by the SP method started --- dTmax calculation by the SP method finished --- dTmax time series aggregation started --- dTmax time series aggregation finished Zero-flow condition estimation finished Fd calculation process started --- Heartwood correction was not applied --- Fd calculation by the SP method finished Fd calculation process finished *** Fluxfixer finished running successfully *** [ FAIL 1 | WARN 0 | SKIP 0 | PASS 48 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-remove_statistical_outlier.R:32:3'): modifying short-term drifts works ── Expected `abs(corrected[101] - 1)` < 0.1. Actual comparison: 1000.0 >= 0.1 Difference: 999.9 >= 0 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 48 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [4s/4s] OK * checking PDF version of manual ... [2s/2s] OK * DONE Status: 1 ERROR * using check arguments '--no-clean-on-error ' * elapsed time (check, wall clock): 1:12