Install log for 'evgmrf'

* installing *source* package ‘evgmrf’ ...
** this is package ‘evgmrf’ version ‘0.1.0’
** package ‘evgmrf’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Matrix/include' -I/opt/R/arm64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Matrix/include' -I/opt/R/arm64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c ald_gmrf.cpp -o ald_gmrf.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Matrix/include' -I/opt/R/arm64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c ald_simple.cpp -o ald_simple.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Matrix/include' -I/opt/R/arm64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c chol_factor.cpp -o chol_factor.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Matrix/include' -I/opt/R/arm64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c gev_gmrf.cpp -o gev_gmrf.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Matrix/include' -I/opt/R/arm64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c gev_simple.cpp -o gev_simple.o
gev_gmrf.cpp:12:14: warning: unused variable 'xieps' [-Wunused-const-variable]
const double xieps = 0.0001;
             ^
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Matrix/include' -I/opt/R/arm64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c gpd_gmrf.cpp -o gpd_gmrf.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Matrix/include' -I/opt/R/arm64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c gpd_simple.cpp -o gpd_simple.o
In file included from chol_factor.cpp:1:
In file included from ./evgmrf_types.h:5:
In file included from In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.hRcppExports.cpp::254:
:
In file included from In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h./evgmrf_types.h:29::
5In file included from :
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/SparseIn file included from :/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h26::
25In file included from :
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/SparseCoreIn file included from :/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h61::
29:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.hIn file included from :/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/Sparse273::2613:
:In file included from  /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/SparseCorewarning: :variable 'count' set but not used [-Wunused-but-set-variable]61
:
      Index count = 0;/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h
:            ^273
:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
      Index count = 0;
            ^
In file included from In file included from chol_factor.cppRcppExports.cpp::41:
:
In file included from In file included from ./evgmrf_types.h./evgmrf_types.h::55:
:
In file included from In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h::25:
25:
In file included from In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h::29:
29:
In file included from In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/Sparse/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/Sparse::2929:
:
In file included from In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU::3535:
:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h::7878::99::  warning: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]

  Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 

        ^        ^

/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h::79:979: :warning: 9:variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 
warning:   Index nsuper_et = 0; // Number of relaxed snodes in the original etree variable 'nsuper_et' set but not used [-Wunused-but-set-variable]

        ^
  Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
        ^
In file included from In file included from RcppExports.cppchol_factor.cpp:4::
1In file included from :
./evgmrf_types.hIn file included from :./evgmrf_types.h5::
5In file included from :
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.hIn file included from :/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h25::
25In file included from :
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h::3131:
:
In file included from In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers::4646:
:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h::7272::1010::  warning: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]variable 'replacements' set but not used [-Wunused-but-set-variable]

                        Index replacements = 0;                        Index replacements = 0;

                              ^                              ^

In file included from RcppExports.cpp:4In file included from :
chol_factor.cpp:In file included from 1./evgmrf_types.h:
In file included from ./evgmrf_types.h::55:
:
In file included from In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigen.h::25:
25In file included from :
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.hIn file included from :/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h37::
37In file included from :
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtraIn file included from :/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra:4545:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:
:/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h246:246::7: 7warning: :variable 'count' set but not used [-Wunused-but-set-variable] 
warning:   int count = 0;variable 'count' set but not used [-Wunused-but-set-variable]

      ^  int count = 0;

      ^
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Matrix/include' -I/opt/R/arm64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c index2W.cpp -o index2W.o
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Matrix/include' -I/opt/R/arm64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c poisgpd_gmrf.cpp -o poisgpd_gmrf.o
gpd_simple.cpp:8:14: warning: unused variable 'xieps' [-Wunused-const-variable]
const double xieps = 0.0001;
             ^
gpd_gmrf.cpp:12:14: warning: unused variable 'xieps' [-Wunused-const-variable]
const double xieps = 0.0001;
             ^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Matrix/include' -I/opt/R/arm64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c poisgpd_simple.cpp -o poisgpd_simple.o
poisgpd_gmrf.cpp:8:14: warning: unused variable 'xieps' [-Wunused-const-variable]
const double xieps = 0.0001;
             ^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Matrix/include' -I/opt/R/arm64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c pproc_gmrf.cpp -o pproc_gmrf.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Matrix/include' -I/opt/R/arm64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c rlarge_gmrf.cpp -o rlarge_gmrf.o
1 warning generated.
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Matrix/include' -I/opt/R/arm64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c rlarge_simple.cpp -o rlarge_simple.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Matrix/include' -I/opt/R/arm64/include    -DARMA_USE_CURRENT -fPIC  -falign-functions=64 -Wall -g -O2   -c stubbs.cpp -o stubbs.o
5 warnings generated.
poisgpd_simple.cpp:6:14: warning: unused variable 'xieps' [-Wunused-const-variable]
const double xieps = 0.0001;
             ^
1 warning generated.
rlarge_gmrf.cpp:12:14: warning: unused variable 'xieps' [-Wunused-const-variable]
const double xieps = 0.0001;
             ^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o evgmrf.so RcppExports.o ald_gmrf.o ald_simple.o chol_factor.o gev_gmrf.o gev_simple.o gpd_gmrf.o gpd_simple.o index2W.o poisgpd_gmrf.o poisgpd_simple.o pproc_gmrf.o rlarge_gmrf.o rlarge_simple.o stubbs.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
ld: warning: could not create compact unwind for ___emutls_get_address: does not use standard frame
ld: warning: could not create compact unwind for _allocate_tramp_ctrl: does not use standard frame
ld: warning: could not create compact unwind for ___gcc_nested_func_ptr_created: does not use standard frame
ld: warning: could not create compact unwind for ___gcc_nested_func_ptr_deleted: does not use standard frame
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.5/evgmrf.Rcheck/00LOCK-evgmrf/00new/evgmrf/libs
** generating debug symbols (dSYM)
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (evgmrf)