* installing *source* package ‘birp’ ...
** this is package ‘birp’ version ‘0.0.6’
** package ‘birp’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
/bin/sh: !!!: command not found
% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0* Host bitbucket.org:443 was resolved.
* IPv6: (none)
* IPv4: 104.192.143.22, 104.192.143.21, 104.192.143.23
* Trying 104.192.143.22:443...
* Connected to bitbucket.org (104.192.143.22) port 443
* ALPN: curl offers h2,http/1.1
* (304) (OUT), TLS handshake, Client hello (1):
} [318 bytes data]
* (304) (IN), TLS handshake, Server hello (2):
{ [122 bytes data]
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{ [79 bytes data]
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* (304) (OUT), TLS handshake, Finished (20):
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* SSL connection using TLSv1.3 / AEAD-CHACHA20-POLY1305-SHA256 / [blank] / UNDEF
* ALPN: server accepted h2
* Server certificate:
* subject: CN=*.bitbucket.org
* start date: Jun 9 00:00:00 2026 GMT
* expire date: Dec 23 23:59:59 2026 GMT
* issuer: C=US; O=Amazon; CN=Amazon ECDSA 256 M04
* SSL certificate verify ok.
* using HTTP/2
0 0 0 0 0 0 0 0 --:--:-- 0:00:02 --:--:-- 0* [HTTP/2] [1] OPENED stream for https://bitbucket.org/wegmannlab/birp_cpp/get/d4b998e55207919c2e0ff4a72752e92e4750fddd.tar.gz
* [HTTP/2] [1] [:method: GET]
* [HTTP/2] [1] [:scheme: https]
* [HTTP/2] [1] [:authority: bitbucket.org]
* [HTTP/2] [1] [:path: /wegmannlab/birp_cpp/get/d4b998e55207919c2e0ff4a72752e92e4750fddd.tar.gz]
* [HTTP/2] [1] [user-agent: curl/8.7.1]
* [HTTP/2] [1] [accept: */*]
> GET /wegmannlab/birp_cpp/get/d4b998e55207919c2e0ff4a72752e92e4750fddd.tar.gz HTTP/2
> Host: bitbucket.org
> User-Agent: curl/8.7.1
> Accept: */*
>
* Request completely sent off
0 0 0 0 0 0 0 0 --:--:-- 0:00:03 --:--:-- 0< HTTP/2 200
< date: Sat, 22 Aug 2026 13:58:26 GMT
< content-type: application/x-tar-gz; charset=utf-8
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< atl-request-id: 64e59c71-8474-449f-8423-e9a62bb062d4
< strict-transport-security: max-age=63072000; includeSubDomains; preload
< report-to: {"endpoints": [{"url": "https://dz8aopenkvv6s.cloudfront.net"}], "group": "endpoint-1", "include_subdomains": true, "max_age": 600}
< nel: {"failure_fraction": 0.01, "include_subdomains": true, "max_age": 600, "report_to": "endpoint-1"}
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<
{ [15672 bytes data]
100 57516 100 57516 0 0 13357 0 0:00:04 0:00:04 --:--:-- 13360
* Connection #0 to host bitbucket.org left intact
x wegmannlab-birp_cpp-d4b998e55207/
x wegmannlab-birp_cpp-d4b998e55207/.gitignore
x wegmannlab-birp_cpp-d4b998e55207/CMakeLists.txt
x wegmannlab-birp_cpp-d4b998e55207/LICENSE
x wegmannlab-birp_cpp-d4b998e55207/README.MD
x wegmannlab-birp_cpp-d4b998e55207/compile_birp.sh
x wegmannlab-birp_cpp-d4b998e55207/core/
x wegmannlab-birp_cpp-d4b998e55207/core/BirpDAG.h
x wegmannlab-birp_cpp-d4b998e55207/core/BirpTypes.h
x wegmannlab-birp_cpp-d4b998e55207/core/TBirpConfiguration.cpp
x wegmannlab-birp_cpp-d4b998e55207/core/TBirpConfiguration.h
x wegmannlab-birp_cpp-d4b998e55207/core/TBirpCore.cpp
x wegmannlab-birp_cpp-d4b998e55207/core/TBirpCore.h
x wegmannlab-birp_cpp-d4b998e55207/core/TBirpPrior.cpp
x wegmannlab-birp_cpp-d4b998e55207/core/TBirpPrior.h
x wegmannlab-birp_cpp-d4b998e55207/core/TBirpTask.cpp
x wegmannlab-birp_cpp-d4b998e55207/core/TBirpTask.h
x wegmannlab-birp_cpp-d4b998e55207/core/TData.cpp
x wegmannlab-birp_cpp-d4b998e55207/core/TData.h
x wegmannlab-birp_cpp-d4b998e55207/core/TDistributions.cpp
x wegmannlab-birp_cpp-d4b998e55207/core/TDistributions.h
x wegmannlab-birp_cpp-d4b998e55207/core/TGamma.cpp
x wegmannlab-birp_cpp-d4b998e55207/core/TGamma.h
x wegmannlab-birp_cpp-d4b998e55207/core/TModels.cpp
x wegmannlab-birp_cpp-d4b998e55207/core/TModels.h
x wegmannlab-birp_cpp-d4b998e55207/core/TUniqueContainer.h
x wegmannlab-birp_cpp-d4b998e55207/main.cpp
x wegmannlab-birp_cpp-d4b998e55207/tests/
x wegmannlab-birp_cpp-d4b998e55207/tests/.gitignore
x wegmannlab-birp_cpp-d4b998e55207/tests/birp_regressionTests
x wegmannlab-birp_cpp-d4b998e55207/tests/find_birp
x wegmannlab-birp_cpp-d4b998e55207/tests/workflow.test
/bin/sh: -S: command not found
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Ibirp_cpp/coretools/core/ -Ibirp_cpp/coretools/fast_float/include/ -Ibirp_cpp/coretools/arma/include/ -Ibirp_cpp/stattools/core/ -Ibirp_cpp/core/ -DUSE_RCPP -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Ibirp_cpp/coretools/core/ -Ibirp_cpp/coretools/fast_float/include/ -Ibirp_cpp/coretools/arma/include/ -Ibirp_cpp/stattools/core/ -Ibirp_cpp/core/ -DUSE_RCPP -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c main.cpp -o main.o
In file included from main.cpp:2:
birp_cpp/core/TBirpTask.h:4:10: fatal error: 'coretools/Main/TTask.h' file not found
#include "coretools/Main/TTask.h"
^~~~~~~~~~~~~~~~~~~~~~~~
1 error generated.
make: *** [main.o] Error 1
make: *** Waiting for unfinished jobs....
ERROR: compilation failed for package ‘birp’
* removing ‘/Volumes/Builds/packages/big-sur-arm64/results/4.5/birp.Rcheck/birp’