* installing *source* package ‘bigstatsr’ ...
** package ‘bigstatsr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/rmio/include' -I/opt/R/arm64/include  -I../inst/include  -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC  -falign-functions=64 -Wall -g -O2  -c AUC.cpp -o AUC.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/rmio/include' -I/opt/R/arm64/include  -I../inst/include  -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC  -falign-functions=64 -Wall -g -O2  -c FBM-extract.cpp -o FBM-extract.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/rmio/include' -I/opt/R/arm64/include  -I../inst/include  -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC  -falign-functions=64 -Wall -g -O2  -c FBM-replace.cpp -o FBM-replace.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/rmio/include' -I/opt/R/arm64/include  -I../inst/include  -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC  -falign-functions=64 -Wall -g -O2  -c FBM-xptr.cpp -o FBM-xptr.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/rmio/include' -I/opt/R/arm64/include  -I../inst/include  -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC  -falign-functions=64 -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/rmio/include' -I/opt/R/arm64/include  -I../inst/include  -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC  -falign-functions=64 -Wall -g -O2  -c arma-prod-self-sub.cpp -o arma-prod-self-sub.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/rmio/include' -I/opt/R/arm64/include  -I../inst/include  -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC  -falign-functions=64 -Wall -g -O2  -c arma-prod-sub.cpp -o arma-prod-sub.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/rmio/include' -I/opt/R/arm64/include  -I../inst/include  -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC  -falign-functions=64 -Wall -g -O2  -c arma-prod.cpp -o arma-prod.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/rmio/include' -I/opt/R/arm64/include  -I../inst/include  -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC  -falign-functions=64 -Wall -g -O2  -c biglassoLin.cpp -o biglassoLin.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/rmio/include' -I/opt/R/arm64/include  -I../inst/include  -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC  -falign-functions=64 -Wall -g -O2  -c biglassoLog.cpp -o biglassoLog.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/rmio/include' -I/opt/R/arm64/include  -I../inst/include  -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC  -falign-functions=64 -Wall -g -O2  -c biglassoUtils.cpp -o biglassoUtils.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/rmio/include' -I/opt/R/arm64/include  -I../inst/include  -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC  -falign-functions=64 -Wall -g -O2  -c colstats.cpp -o colstats.o
In file included from colstats.cpp:4:
../inst/include/bigstatsr/colstats.hpp:23:7: warning: unused variable 'chunk_size' [-Wunused-variable]
  int chunk_size = ceil(m / (10.0 * ncores));
      ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/rmio/include' -I/opt/R/arm64/include  -I../inst/include  -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC  -falign-functions=64 -Wall -g -O2  -c counts.cpp -o counts.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/rmio/include' -I/opt/R/arm64/include  -I../inst/include  -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC  -falign-functions=64 -Wall -g -O2  -c errorMsgs.cpp -o errorMsgs.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/rmio/include' -I/opt/R/arm64/include  -I../inst/include  -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC  -falign-functions=64 -Wall -g -O2  -c prodMatVec.cpp -o prodMatVec.o
In file included from prodMatVec.cpp:4:
../inst/include/bigstatsr/prodMatVec.hpp:28:7: warning: unused variable 'chunk_size' [-Wunused-variable]
  int chunk_size = ceil(m / (10.0 * ncores));
      ^
../inst/include/bigstatsr/prodMatVec.hpp:61:7: warning: unused variable 'chunk_size' [-Wunused-variable]
  int chunk_size = ceil(m / (10.0 * ncores));
      ^
2 warnings generated.
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/rmio/include' -I/opt/R/arm64/include  -I../inst/include  -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC  -falign-functions=64 -Wall -g -O2  -c transpose.cpp -o transpose.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/rmio/include' -I/opt/R/arm64/include  -I../inst/include  -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC  -falign-functions=64 -Wall -g -O2  -c univRegLin5.cpp -o univRegLin5.o
In file included from univRegLin5.cpp:3:
../inst/include/bigstatsr/univLinReg.hpp:35:7: warning: unused variable 'chunk_size' [-Wunused-variable]
  int chunk_size = ceil(m / (10.0 * ncores));
      ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/rmio/include' -I/opt/R/arm64/include  -I../inst/include  -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC  -falign-functions=64 -Wall -g -O2  -c univRegLog.cpp -o univRegLog.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/rmio/include' -I/opt/R/arm64/include  -I../inst/include  -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC  -falign-functions=64 -Wall -g -O2  -c utils-mat.cpp -o utils-mat.o
clang++ -arch arm64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o bigstatsr.so AUC.o FBM-extract.o FBM-replace.o FBM-xptr.o RcppExports.o arma-prod-self-sub.o arma-prod-sub.o arma-prod.o biglassoLin.o biglassoLog.o biglassoUtils.o colstats.o counts.o errorMsgs.o prodMatVec.o transpose.o univRegLin5.o univRegLog.o utils-mat.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/R/arm64/gfortran/lib/gcc/aarch64-apple-darwin20.6.0/12.0.1 -L/opt/R/arm64/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: dylib (/opt/R/arm64/gfortran/lib/libgfortran.dylib) was built for newer macOS version (11.5) than being linked (11.0)
ld: warning: dylib (/opt/R/arm64/gfortran/lib/libquadmath.dylib) was built for newer macOS version (11.5) than being linked (11.0)
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.2/bigstatsr.Rcheck/00LOCK-bigstatsr/00new/bigstatsr/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘typeof’ from package ‘base’ in package ‘bigstatsr’
Creating a generic function for ‘diag’ from package ‘base’ in package ‘bigstatsr’
Creating a generic function for ‘crossprod’ from package ‘base’ in package ‘bigstatsr’
Creating a generic function for ‘tcrossprod’ from package ‘base’ in package ‘bigstatsr’
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bigstatsr)