* using log directory ‘/Volumes/Builds/packages/big-sur-arm64/results/4.4/amp.dm.Rcheck’ * using R version 4.4.3 Patched (2026-02-12 r89409) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.7.8 * using session charset: UTF-8 * checking for file ‘amp.dm/DESCRIPTION’ ... OK * this is package ‘amp.dm’ version ‘0.2.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘amp.dm’ can be installed ... [1s/1s] OK See 'https://www.r-project.org/nosvn/R.check/r-oldrel-macos-arm64/amp.dm-00install.html' for details. * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [1s/1s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [1s/1s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [2s/2s] ERROR Running ‘testthat.R’ [2s/2s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(amp.dm) > > test_check("amp.dm") Read 3 items Saving _problems/test_dataio-60.R Saving _problems/test_dataio-73.R Saving _problems/test_dosefunc-119.R Saving _problems/test_tabulate-15.R Saving _problems/test_tabulate-36.R Saving _problems/test_tabulate-136.R [ FAIL 6 | WARN 105 | SKIP 0 | PASS 272 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_dataio.R:60:3'): make_readonly correctly sets reaonly attribute ── Error: [EACCES] Failed to stat '/Volumes/Temp/tmp/RtmpCY2TaS/file22117a2b90f0.txt': permission denied Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test_dataio.R:60:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─base::substr(fs::file_info(tmpfn2)$permissions, 1, 3) 5. └─fs::file_info(tmpfn2) ── Error ('test_dataio.R:73:3'): output_data correctly outputs data ──────────── Error in `file(file, "rt")`: cannot open the connection Backtrace: ▆ 1. └─utils::read.csv(paste0(tmpf, ".csv"), stringsAsFactors = FALSE) at test_dataio.R:73:3 2. └─utils::read.table(...) 3. └─base::file(file, "rt") ── Failure ('test_dosefunc.R:119:3'): impute_dose correctly creates additional dose records ── Expected `as.character(check$dt[check$ID == 1 & check$type == "additional"])[1]` to equal "2016-02-15 04:44:00". Differences: 1/1 mismatches x[1]: "2016-02-14 04:44:00" y[1]: "2016-02-15 04:44:00" ── Error ('test_tabulate.R:15:3'): general_tbl correctly creates generic latex table, file or passes data frame ── Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection Backtrace: ▆ 1. └─amp.dm::general_tbl(Theoph, outnm = tmpf1, ret = "file", show = FALSE) at test_tabulate.R:15:3 2. └─R3port::ltx_list(data, out = outnm, mancol = align, ...) 3. └─base::cat(tbl, sep = "\n", file = rawout) 4. └─base::file(file, ifelse(append, "a", "w")) ── Error ('test_tabulate.R:36:3'): define_tbl correctly tabulates attributes ─── Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection Backtrace: ▆ 1. └─amp.dm::define_tbl(attrl, outnm = tmpf1, ret = "file", show = FALSE) at test_tabulate.R:36:3 2. └─amp.dm::general_tbl(...) 3. └─R3port::ltx_list(data, out = outnm, mancol = align, ...) 4. └─base::cat(tbl, sep = "\n", file = rawout) 5. └─base::file(file, ifelse(append, "a", "w")) ── Error ('test_tabulate.R:136:3'): check_nmdata correctly checks a NONMEM dataset ── Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection Backtrace: ▆ 1. └─utils::write.table(...) 2. └─base::file(file, ifelse(append, "a", "w")) [ FAIL 6 | WARN 105 | SKIP 0 | PASS 272 ] Error: ! Test failures. Execution halted rm: /Volumes/Temp/tmp/RtmpCY2TaS: Permission denied * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [4s/4s] OK * checking PDF version of manual ... [2s/2s] OK * DONE Status: 1 ERROR * using check arguments '--no-clean-on-error ' * elapsed time (check, wall clock): 0:27