- using R version 4.5.2 Patched (2026-01-31 r89382)
- using platform: aarch64-apple-darwin20
- R was compiled by
Apple clang version 16.0.0 (clang-1600.0.26.6)
GNU Fortran (GCC) 14.2.0
- running under: macOS Ventura 13.7.8
- using session charset: UTF-8
- checking for file ‘adlaplace/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘adlaplace’ version ‘0.7.4’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘adlaplace’ can be installed ... [44s/16s] OK
See the install log for details.
- used C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
- used SDK: ‘MacOSX11.3.1.sdk’
- checking installed package size ... INFO
installed size is 16.5Mb
sub-directories of 1Mb or more:
doc 1.4Mb
libs 13.7Mb
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s/1s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the package can be unloaded cleanly ... [1s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
- checking loading without being on the library search path ... [1s/1s] OK
- checking whether startup messages can be suppressed ... [1s/1s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [4s/4s] OK
- checking Rd files ... [0s/0s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [1s/1s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in shell scripts ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking compiled code ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [1s/1s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [7s/8s] ERROR
Running ‘testthat.R’ [7s/7s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(adlaplace)
>
> # CRAN policy: at most two cores at once. data.table OpenMP can otherwise
> # run alongside package OpenMP teams and inflate CPU/elapsed time.
> data.table::setDTthreads(1L)
>
> test_check("adlaplace")
Saving _problems/test-obs-sparsity-203.R
[ FAIL 1 | WARN 0 | SKIP 20 | PASS 976 ]
══ Skipped tests (20) ══════════════════════════════════════════════════════════
• On CRAN (2): 'test-cppad-teardown.R:92:3',
'test-log-lik-parallel-model-data.R:3:3'
• OpenMP not available in this build (18):
'test-cppad-setup-transition.R:69:3', 'test-cppad-setup-transition.R:75:3',
'test-cppad-setup-transition.R:81:3', 'test-cppad-teardown.R:43:3',
'test-cppad-teardown.R:59:3', 'test-fun-obj-fdfh.R:109:3',
'test-fun-obj-fdfh.R:130:3', 'test-fun-obj-fdfh.R:136:3',
'test-get-ad-fun-handle.R:177:3', 'test-get-ad-fun-handle.R:297:3',
'test-log-lik-deriv-parallel.R:2:3', 'test-log-lik-deriv-parallel.R:56:3',
'test-log-lik-deriv-parallel.R:161:3', 'test-reorder-shards.R:23:3',
'test-reorder-shards.R:59:3', 'test-reorder-shards.R:126:3',
'test-reorder-shards.R:179:3', 'test-serial-dens-affinity.R:2:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-obs-sparsity.R:203:3'): dirichlet_multinomial analytic Hessian uses per-stratum cliques ──
Expected `ncol(og)` to equal 4L.
Differences:
`actual`: 2
`expected`: 4
[ FAIL 1 | WARN 0 | SKIP 20 | PASS 976 ]
Error:
! Test failures.
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [60s/61s] OK
- checking PDF version of manual ... [5s/5s] OK
- DONE
Status: 1 ERROR