Check results for 'TriLLIEM'

using R version 4.4.3 Patched (2026-02-12 r89409)
using platform: aarch64-apple-darwin20
R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0
running under: macOS Ventura 13.7.8
using session charset: UTF-8
checking for file ‘TriLLIEM/DESCRIPTION’ ... OK
checking extension type ... Package
this is package ‘TriLLIEM’ version ‘0.1.0’
package encoding: UTF-8
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘TriLLIEM’ can be installed ... [1s/1s] OK See the install log for details.
checking installed package size ... OK
checking package directory ... OK
checking ‘build’ directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking code files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [0s/0s] OK
checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
checking whether the package can be unloaded cleanly ... [0s/0s] OK
checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
checking loading without being on the library search path ... [0s/0s] OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [1s/1s] OK
checking Rd files ... [0s/0s] OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... [0s/0s] OK
checking LazyData ... OK
checking data for ASCII and uncompressed saves ... OK
checking R/sysdata.rda ... OK
checking installed files from ‘inst/doc’ ... OK
checking files in ‘vignettes’ ... OK
checking examples ... [2s/2s] OK
checking for unstated dependencies in ‘tests’ ... OK
checking tests ... [3s/3s] ERROR Running ‘testthat.R’ [3s/3s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(TriLLIEM) > > test_check("TriLLIEM") Saving _problems/test-fullview-3.R Saving _problems/test-simulate-3.R [ FAIL 2 | WARN 0 | SKIP 10 | PASS 0 ] ══ Skipped tests (10) ══════════════════════════════════════════════════════════ • On CRAN (10): 'test-TriLLIEM.R:1:1', 'test-TriLLIEM.R:6:1', 'test-anova.TriLLIEM.R:1:1', 'test-anova.TriLLIEM.R:7:1', 'test-fullview.R:6:1', 'test-simulate.R:6:1', 'test-simulate.R:18:1', 'test-summary.TriLLIEM.R:1:1', 'test-summary.TriLLIEM.R:6:1', 'test-summary.TriLLIEM.R:36:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-fullview.R:3:3'): expected example_dat4R ───────────────────── Expected `fullview(simulateData())` to be identical to `fullview(example_dat4R)`. Differences: actual vs expected prMF prMFCOrg PrCMFEgivenD count actual[1, ] 0.2401 0.2401 0.2401 234 - actual[2, ] 0.2058 0.1029 0.1029 112 + expected[2, ] 0.2058 0.1029 0.1029 120 - actual[3, ] 0.2058 0.1029 0.1029 84 + expected[3, ] 0.2058 0.1029 0.1029 102 - actual[4, ] 0.2058 0.1029 0.1029 102 + expected[4, ] 0.2058 0.1029 0.1029 84 - actual[5, ] 0.2058 0.1029 0.1029 120 + expected[5, ] 0.2058 0.1029 0.1029 112 - actual[6, ] 0.0441 0.0441 0.0441 37 + expected[6, ] 0.0441 0.0441 0.0441 52 - actual[7, ] 0.0441 0.0441 0.0441 42 + expected[7, ] 0.0441 0.0441 0.0441 40 - actual[8, ] 0.1764 0.0441 0.0441 35 + expected[8, ] 0.1764 0.0441 0.0441 37 - actual[9, ] 0.1764 0.0441 0.0441 46 + expected[9, ] 0.1764 0.0441 0.0441 35 - actual[10, ] 0.1764 0.0441 0.0441 52 + expected[10, ] 0.1764 0.0441 0.0441 46 and 4 more ... actual$prMF | expected$prMF [1] 0.240099999999999980 | 0.240099999999999980 [1] [2] 0.205800000000000011 - 0.205799999999999983 [2] [3] 0.205800000000000011 - 0.205799999999999983 [3] [4] 0.205800000000000011 - 0.205799999999999983 [4] [5] 0.205800000000000011 - 0.205799999999999983 [5] [6] 0.044100000000000000 | 0.044100000000000000 [6] [7] 0.044100000000000000 | 0.044100000000000000 [7] [8] 0.176400000000000029 - 0.176399999999999973 [8] [9] 0.176400000000000029 - 0.176399999999999973 [9] [10] 0.176400000000000029 - 0.176399999999999973 [10] ... ... ... and 4 more ... actual$prMFCOrg | expected$prMFCOrg [1] 0.240099999999999980 | 0.240099999999999980 [1] [2] 0.102900000000000005 - 0.102899999999999991 [2] [3] 0.102900000000000005 - 0.102899999999999991 [3] [4] 0.102900000000000005 - 0.102899999999999991 [4] [5] 0.102900000000000005 - 0.102899999999999991 [5] [6] 0.044100000000000000 | 0.044100000000000000 [6] [7] 0.044100000000000000 | 0.044100000000000000 [7] [8] 0.044100000000000007 - 0.044099999999999993 [8] [9] 0.044100000000000007 - 0.044099999999999993 [9] [10] 0.044100000000000007 - 0.044099999999999993 [10] ... ... ... and 4 more ... actual$PrCMFEgivenD | expected$PrCMFEgivenD [1] 0.2400999999999999246 - 0.2401000000000000079 [1] [2] 0.1028999999999999776 - 0.1029000000000000054 [2] [3] 0.1028999999999999776 - 0.1029000000000000054 [3] [4] 0.1028999999999999776 - 0.1029000000000000054 [4] [5] 0.1028999999999999776 - 0.1029000000000000054 [5] [6] 0.0440999999999999934 - 0.0441000000000000072 [6] [7] 0.0440999999999999934 - 0.0441000000000000072 [7] [8] 0.0441000000000000003 | 0.0441000000000000003 [8] [9] 0.0441000000000000003 | 0.0441000000000000003 [9] [10] 0.0441000000000000003 | 0.0441000000000000003 [10] ... ... ... and 6 more ... `actual$count[1:14]`: 234 112 84 102 120 37 42 35 46 52 and 4 more... `expected$count[1:14]`: 234 120 102 84 112 52 40 37 35 46 ... ── Failure ('test-simulate.R:3:3'): expected example_dat4R ───────────────────── Expected `simulateData()` to be identical to `example_dat4R`. Differences: attr(actual, 'ALL') vs attr(expected, 'ALL') prMF prMFCOrg PrCMFEgivenD count attr(actual, 'ALL')[1, ] 0.2401 0.2401 0.2401 234 - attr(actual, 'ALL')[2, ] 0.2058 0.1029 0.1029 112 + attr(expected, 'ALL')[2, ] 0.2058 0.1029 0.1029 120 - attr(actual, 'ALL')[3, ] 0.2058 0.1029 0.1029 84 + attr(expected, 'ALL')[3, ] 0.2058 0.1029 0.1029 102 - attr(actual, 'ALL')[4, ] 0.2058 0.1029 0.1029 102 + attr(expected, 'ALL')[4, ] 0.2058 0.1029 0.1029 84 - attr(actual, 'ALL')[5, ] 0.2058 0.1029 0.1029 120 + attr(expected, 'ALL')[5, ] 0.2058 0.1029 0.1029 112 - attr(actual, 'ALL')[6, ] 0.0441 0.0441 0.0441 37 + attr(expected, 'ALL')[6, ] 0.0441 0.0441 0.0441 52 - attr(actual, 'ALL')[7, ] 0.0441 0.0441 0.0441 42 + attr(expected, 'ALL')[7, ] 0.0441 0.0441 0.0441 40 - attr(actual, 'ALL')[8, ] 0.1764 0.0441 0.0441 35 + attr(expected, 'ALL')[8, ] 0.1764 0.0441 0.0441 37 - attr(actual, 'ALL')[9, ] 0.1764 0.0441 0.0441 46 + attr(expected, 'ALL')[9, ] 0.1764 0.0441 0.0441 35 - attr(actual, 'ALL')[10, ] 0.1764 0.0441 0.0441 52 + attr(expected, 'ALL')[10, ] 0.1764 0.0441 0.0441 46 and 4 more ... attr(actual, 'ALL')$prMF | attr(expected, 'ALL')$prMF [1] 0.240099999999999980 | 0.240099999999999980 [1] [2] 0.205800000000000011 - 0.205799999999999983 [2] [3] 0.205800000000000011 - 0.205799999999999983 [3] [4] 0.205800000000000011 - 0.205799999999999983 [4] [5] 0.205800000000000011 - 0.205799999999999983 [5] [6] 0.044100000000000000 | 0.044100000000000000 [6] [7] 0.044100000000000000 | 0.044100000000000000 [7] [8] 0.176400000000000029 - 0.176399999999999973 [8] [9] 0.176400000000000029 - 0.176399999999999973 [9] [10] 0.176400000000000029 - 0.176399999999999973 [10] ... ... ... and 4 more ... attr(actual, 'ALL')$prMFCOrg[1:14] vs attr(expected, 'ALL')$prMFCOrg[1:14] 0.240099999999999980 - 0.102900000000000005 + 0.102899999999999991 - 0.102900000000000005 + 0.102899999999999991 - 0.102900000000000005 + 0.102899999999999991 - 0.102900000000000005 + 0.102899999999999991 0.044100000000000000 0.044100000000000000 - 0.044100000000000007 + 0.044099999999999993 - 0.044100000000000007 + 0.044099999999999993 - 0.044100000000000007 + 0.044099999999999993 and 4 more ... attr(actual, 'ALL')$PrCMFEgivenD vs attr(expected, 'ALL')$PrCMFEgivenD - 0.2400999999999999246 + 0.2401000000000000079 - 0.1028999999999999776 + 0.1029000000000000054 - 0.1028999999999999776 + 0.1029000000000000054 - 0.1028999999999999776 + 0.1029000000000000054 - 0.1028999999999999776 + 0.1029000000000000054 - 0.0440999999999999934 + 0.0441000000000000072 - 0.0440999999999999934 + 0.0441000000000000072 0.0441000000000000003 0.0441000000000000003 0.0441000000000000003 and 6 more ... attr(actual, 'ALL')$count | attr(expected, 'ALL')$count [1] 234 | 234 [1] [2] 112 - 120 [2] [3] 84 - 102 [3] [4] 102 - 84 [4] [5] 120 - 112 [5] [6] 37 - 52 [6] [7] 42 - 40 [7] [8] 35 - 37 [8] [9] 46 - 35 [9] [10] 52 - 46 [10] ... ... ... and 4 more ... actual vs expected count actual[1, ] 234 - actual[2, ] 112 + expected[2, ] 120 - actual[3, ] 84 + expected[3, ] 102 - actual[4, ] 102 + expected[4, ] 84 - actual[5, ] 120 + expected[5, ] 112 - actual[6, ] 37 + expected[6, ] 52 - actual[7, ] 42 + expected[7, ] 40 - actual[8, ] 35 + expected[8, ] 37 - actual[9, ] 98 + expected[9, ] 81 - actual[10, ] 40 + expected[10, ] 42 and 3 more ... `actual$count[1:13]`: 234 112 84 102 120 37 42 35 98 40 and 3 more... `expected$count[1:13]`: 234 120 102 84 112 52 40 37 81 42 ... [ FAIL 2 | WARN 0 | SKIP 10 | PASS 0 ] Error: ! Test failures. Execution halted
checking for unstated dependencies in vignettes ... OK
checking package vignettes ... OK
checking re-building of vignette outputs ... [4s/4s] OK
checking PDF version of manual ... [2s/2s] OK
DONE Status: 1 ERROR
using check arguments '--no-clean-on-error '