• using R version 4.5.2 Patched (2026-01-31 r89382)
• using platform: aarch64-apple-darwin20
• R was compiled by     Apple clang version 16.0.0 (clang-1600.0.26.6)     GNU Fortran (GCC) 14.2.0
• running under: macOS Ventura 13.7.8
• using session charset: UTF-8
• checking for file ‘Spec2Annot/DESCRIPTION’ ... OK
• this is package ‘Spec2Annot’ version ‘1.3.4’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘Spec2Annot’ can be installed ... [9s/5s] OK See the install log for details.
• used C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
• used SDK: ‘MacOSX11.3.1.sdk’
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [1s/1s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking compiled code ... OK
• checking examples ... [3s/3s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [5s/5s] ERROR   Running ‘testthat.R’ [5s/5s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview   > # * https://testthat.r-lib.org/articles/special-files.html   >   > library(testthat)   > library(Spec2Annot)   >   > test_check("Spec2Annot")   Loading required package: data.table   Loading required package: magrittr      Attaching package: 'magrittr'      The following objects are masked from 'package:testthat':          equals, is_less_than, not      0 annotation, returning empty table   0 annotation, returning empty table   Saving _problems/test-brute_force_const-20.R   0 annotation, returning empty table   Saving _problems/test-brute_force_const-24.R   [ FAIL 2 | WARN 0 | SKIP 1 | PASS 751 ]      ══ Skipped tests (1) ═══════════════════════════════════════════════════════════   • For development only (1): 'test-00-devonly.R:1:1'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-brute_force_const.R:20:5'): brute_force_const() ──────────────   Expected `nrow(temp) == 1` to be TRUE.   Differences:   `actual`: FALSE   `expected`: TRUE      Backtrace:       ▆    1. └─base::lapply(...) at test-brute_force_const.R:11:3    2. └─Spec2Annot (local) FUN(X[[i]], ...)    3. └─testthat::expect_true(nrow(temp) == 1) at test-brute_force_const.R:20:5   ── Error ('test-brute_force_const.R:24:5'): brute_force_const() ────────────────   Error in ``[.data.table`(temp_form, 1, formula)`: j (the 2nd argument inside [...]) is a single symbol but column name 'formula' is not found. If you intended to select columns using a variable in calling scope, please try DT[, ..formula]. The .. prefix conveys one-level-up similar to a file system path.   Backtrace:       ▆    1. └─base::lapply(...) at test-brute_force_const.R:11:3    2. └─Spec2Annot (local) FUN(X[[i]], ...)    3. ├─testthat::expect_true(temp_form[1, formula] == formula) at test-brute_force_const.R:24:5    4. │ └─testthat::quasi_label(enquo(object), label)    5. │ └─rlang::eval_bare(expr, quo_get_env(quo))    6. ├─temp_form[1, formula]    7. └─data.table:::`[.data.table`(temp_form, 1, formula)    8. └─data.table:::stopf(...)    9. └─data.table:::raise_condition(...)      [ FAIL 2 | WARN 0 | SKIP 1 | PASS 751 ]   Error:   ! Test failures.   Execution halted
• checking PDF version of manual ... [4s/4s] OK
• DONE

Status: 1 ERROR