• using R version 4.3.3 (2024-02-29)
• using platform: aarch64-apple-darwin20 (64-bit)
• R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 12.2.0
• running under: macOS Ventura 13.4
• using session charset: UTF-8
• checking for file ‘SpaDES.core/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘SpaDES.core’ version ‘2.1.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... NOTE Package suggested but not available for checking: ‘NLMR’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘SpaDES.core’ can be installed ... [20s/20s] OK See the install log for details.
• checking installed package size ... NOTE   installed size is 6.7Mb   sub-directories of 1Mb or more:     R 4.9Mb
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [4s/4s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
• checking whether the package can be unloaded cleanly ... [3s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/3s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/4s] OK
• checking loading without being on the library search path ... [3s/3s] OK
• checking startup messages can be suppressed ... [3s/3s] OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [14s/14s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [7s/7s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [39s/42s] OK   Running ‘test-all.R’ [38s/42s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [12s/13s] ERROR Errors in running code in vignettes: when running code in ‘ii-modules.Rmd’   ... restartSpades() The initial state of the last1events are cached and savedin the simList located at savedSimEnv()$.sim,as sim$.recoverableObjs, with the most recent eventthe first element in the list, 2nd most recent event = the second most recent event, etc. The objects contained in each of those are only the objects that may havechanged, according to the metadata for each module. To recover, use:cli-92167-1 Because of an interrupted spades call, the sim object at the start of the interrupted event was saved in SpaDES.core:::savedSimEnv()$.sim It will be deleted on next call to spades().   When sourcing ‘ii-modules.R’: Error: Package 'NLMR' not available. Please install it using:   install.packages('NLMR', repos = 'https://predictiveecology.r-universe.dev') Execution halted when running code in ‘iii-cache.Rmd’   ... The initial state of the last1events are cached and savedin the simList located at savedSimEnv()$.sim,as sim$.recoverableObjs, with the most recent eventthe first element in the list, 2nd most recent event = the second most recent event, etc. The objects contained in each of those are only the objects that may havechanged, according to the metadata for each module. To recover, use:cli-92167-1 Because of an interrupted spades call, the sim object at the start of the interrupted event was saved in SpaDES.core:::savedSimEnv()$.sim It will be deleted on next call to spades(). Timing stopped at: 0.207 0.016 0.228   When sourcing ‘iii-cache.R’: Error: Package 'NLMR' not available. Please install it using:   install.packages('NLMR', repos = 'https://predictiveecology.r-universe.dev') Execution halted   ‘i-introduction.Rmd’ using ‘UTF-8’... [3s/3s] OK   ‘ii-modules.Rmd’ using ‘UTF-8’... failed   ‘iii-cache.Rmd’ using ‘UTF-8’... failed   ‘iv-advanced.Rmd’ using ‘UTF-8’... [0s/0s] OK   ‘v-automated-testing.Rmd’ using ‘UTF-8’... [0s/0s] OK
• checking re-building of vignette outputs ... [23s/25s] OK
• checking PDF version of manual ... [11s/12s] OK
• DONE Status: 1 ERROR, 2 NOTEs
• using check arguments '--no-clean-on-error '