* installing *source* package ‘SimInf’ ...
** package ‘SimInf’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... clang -arch arm64
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether clang -arch arm64 accepts -g... yes
checking for clang -arch arm64 option to enable C11 features... none needed
checking for clang -arch arm64 option to support OpenMP... unsupported
checking whether OpenMP will work in a package... no
configure: WARNING:
-----------------------------------------------
Unable to find OpenMP on this system.
Building a version without support for OpenMP.
-----------------------------------------------
checking for gsl-config... /opt/R/arm64/bin/gsl-config
---- Results for the SimInf package configure ----
PKG_CPPFLAGS..............: -I. -I../inst/include -I/opt/R/arm64/include -I/opt/R/arm64/include -DR_NO_REMAP -DSTRICT_R_HEADERS
PKG_CFLAGS................:
PKG_LIBS..................: -L/opt/R/arm64/lib -lgsl -lgslcblas
Have support for OpenMP...: no
--------------------------------------------------
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I/opt/R/arm64/include -I/opt/R/arm64/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c misc/SimInf_particle_filter.c -o misc/SimInf_particle_filter.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I/opt/R/arm64/include -I/opt/R/arm64/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c misc/SimInf_distance_matrix.c -o misc/SimInf_distance_matrix.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I/opt/R/arm64/include -I/opt/R/arm64/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c misc/SimInf_openmp.c -o misc/SimInf_openmp.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I/opt/R/arm64/include -I/opt/R/arm64/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c misc/SimInf_forward_euler_linear_decay.c -o misc/SimInf_forward_euler_linear_decay.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I/opt/R/arm64/include -I/opt/R/arm64/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c misc/binheap.c -o misc/binheap.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I/opt/R/arm64/include -I/opt/R/arm64/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c misc/SimInf_local_spread.c -o misc/SimInf_local_spread.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I/opt/R/arm64/include -I/opt/R/arm64/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c misc/SimInf_abc.c -o misc/SimInf_abc.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I/opt/R/arm64/include -I/opt/R/arm64/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c misc/SimInf_clean_indiv_events.c -o misc/SimInf_clean_indiv_events.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I/opt/R/arm64/include -I/opt/R/arm64/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c misc/SimInf_ldata.c -o misc/SimInf_ldata.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I/opt/R/arm64/include -I/opt/R/arm64/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c misc/SimInf_trajectory.c -o misc/SimInf_trajectory.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I/opt/R/arm64/include -I/opt/R/arm64/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c misc/SimInf_arg.c -o misc/SimInf_arg.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I/opt/R/arm64/include -I/opt/R/arm64/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c init.c -o init.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I/opt/R/arm64/include -I/opt/R/arm64/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c solvers/ssm/SimInf_solver_ssm.c -o solvers/ssm/SimInf_solver_ssm.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I/opt/R/arm64/include -I/opt/R/arm64/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c solvers/SimInf_solver.c -o solvers/SimInf_solver.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I/opt/R/arm64/include -I/opt/R/arm64/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c solvers/aem/SimInf_solver_aem.c -o solvers/aem/SimInf_solver_aem.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I/opt/R/arm64/include -I/opt/R/arm64/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c models/SISe_sp.c -o models/SISe_sp.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I/opt/R/arm64/include -I/opt/R/arm64/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c models/SISe.c -o models/SISe.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I/opt/R/arm64/include -I/opt/R/arm64/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c models/SIR.c -o models/SIR.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I/opt/R/arm64/include -I/opt/R/arm64/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c models/SIS.c -o models/SIS.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I/opt/R/arm64/include -I/opt/R/arm64/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c models/SISe3_sp.c -o models/SISe3_sp.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I/opt/R/arm64/include -I/opt/R/arm64/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c models/SEIR.c -o models/SEIR.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I/opt/R/arm64/include -I/opt/R/arm64/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c models/SISe3.c -o models/SISe3.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I/opt/R/arm64/include -I/opt/R/arm64/include -DR_NO_REMAP -DSTRICT_R_HEADERS -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c SimInf.c -o SimInf.o
clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o SimInf.so misc/SimInf_particle_filter.o misc/SimInf_distance_matrix.o misc/SimInf_openmp.o misc/SimInf_forward_euler_linear_decay.o misc/binheap.o misc/SimInf_local_spread.o misc/SimInf_abc.o misc/SimInf_clean_indiv_events.o misc/SimInf_ldata.o misc/SimInf_trajectory.o misc/SimInf_arg.o init.o solvers/ssm/SimInf_solver_ssm.o solvers/SimInf_solver.o solvers/aem/SimInf_solver_aem.o models/SISe_sp.o models/SISe.o models/SIR.o models/SIS.o models/SISe3_sp.o models/SEIR.o models/SISe3.o SimInf.o -L/opt/R/arm64/lib -lgsl -lgslcblas -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.3/SimInf.Rcheck/00LOCK-SimInf/00new/SimInf/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SimInf)