Install log for 'SAM'

* installing *source* package ‘SAM’ ...
** package ‘SAM’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether OpenMP will work in a package... no
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c amalgamation.cpp -o amalgamation.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c c_api.cpp -o c_api.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c utils.cpp -o utils.o
In file included from amalgamation.cpp:2:
In file included from ./objective/GLMObjective.cpp:1:
In file included from ./objective/GLMObjective.h:4:
In file included from ./objective/objective.h:In file included from c_api.cppIn file included from utils.cpp:1:
In file included from ./utils.h:1:
In file included from ./c_api/grplasso.cpp:26:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25:
In file included from :
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29:
In file included from :5:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.hIn file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29:
:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273In file included from :13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/Sparse::273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]26      Index count = 0;
            ^

:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13:      Index count = 0;
            ^
 warning: variable 'count' set but not used [-Wunused-but-set-variable]
      Index count = 0;
            ^
In file included from utils.cpp:In file included from c_api.cpp:1:
In file included from amalgamation.cpp:2:
In file included from ./objective/GLMObjective.cppIn file included from ./c_api/grplasso.cpp:2:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29:
1:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:In file included from ./utils.h:5:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h::1:
25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29:
In file included from In file included from ./objective/GLMObjective.h:4:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU29:35:
:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h  Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
        ^In file included from ./objective/objective.h:
78::6:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:299: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h  Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
:79:9        ^
:
: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/Sparse::9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]  Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
        ^
29:

In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35:
  Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
        ^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
  Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
        ^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
  Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
        ^
In file included from amalgamation.cpp:2:
In file included from ./objective/GLMObjective.cpp:1:
In file included from ./objective/GLMObjective.h:4:
In file included from ./objective/objective.hIn file included from utils.cpp:6:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25:
In file included from In file included from c_api.cpp/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46::
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:101:
In file included from ./utils.h::5:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:251:
In file included from : warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
:
                        Index replacements = 0;
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:./c_api/grplasso.cpp31:
                              ^
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
:2:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:                        Index replacements = 0;
                              ^
31:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
                        Index replacements = 0;
                              ^
In file included from utils.cpp:1:
In file included from ./utils.h:In file included from In file included from c_api.cpp5:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25:
:In file included from 1:
In file included from ./c_api/grplasso.cpp/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37:
amalgamation.cpp:2In file included from :
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
:In file included from 2/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h  int count = 0;
:
      ^
:37:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:In file included from ./objective/GLMObjective.cpp:1:
246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
In file included from ./objective/GLMObjective.h:4:
In file included from ./objective/objective.h:6:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h  int count = 0;
      ^
:37:
In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  int count = 0;
      ^
5 warnings generated.
5 warnings generated.
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o SAM.so amalgamation.o c_api.o utils.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.4/SAM.Rcheck/00LOCK-SAM/00new/SAM/libs
** generating debug symbols (dSYM)
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SAM)