Install log for 'PSGD'

* installing *source* package ‘PSGD’ ...
** package ‘PSGD’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether clang++ -arch arm64 -std=gnu++17 accepts -g... yes
checking how to run the C++ preprocessor... clang++ -arch arm64 -std=gnu++17 -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdint.h... (cached) yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking climits usability... yes
checking climits presence... yes
checking for climits... yes
Type unsigned long long is supported
uint16_t and unit8_t are available in stdint.h
uint16_t and unit8_t are available in inttypes.h
Found builtin CTZ method (for unsigned long)
Found builtin CTZ method (for unsigned long long)
checking for ffsl... yes
checking for ffsll... yes
Found builtin popcount method (for unsigned long)
Found builtin popcount method (for unsigned long long)
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for clang++ -arch arm64 -std=gnu++17 option to support OpenMP... unsupported
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/autoconfig.h
** libs
using C++ compiler: ‘Apple clang version 13.0.0 (clang-1300.0.29.30)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c Logistic_Model.cpp -o Logistic_Model.o
In file included from Logistic_Model.cpp:17:
In file included from ./Logistic_Model.hpp:19:
./config.h:23:12: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined]
#   define ARMA_DONT_USE_OPENMP
           ^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h:31:9: note: previous definition is here
#define ARMA_DONT_USE_OPENMP 1
        ^
In file included from Logistic_Model.cpp:17:
./Logistic_Model.hpp:41:15: warning: private field 'beta_size' is not used [-Wunused-private-field]
  arma::uword beta_size; // Number of coefficients
              ^
2 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c Main_CV_PSGD.cpp -o Main_CV_PSGD.o
In file included from Main_CV_PSGD.cpp:16:
In file included from ./PSGD.hpp:19:
In file included from ./PS_Model.hpp:19:
In file included from ./Logistic_Model.hpp:19:
./config.h:23:12: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined]
#   define ARMA_DONT_USE_OPENMP
           ^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h:31:9: note: previous definition is here
#define ARMA_DONT_USE_OPENMP 1
        ^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c Main_PSGD.cpp -o Main_PSGD.o
In file included from Main_PSGD.cpp:16:
In file included from ./PSGD.hpp:19:
In file included from ./PS_Model.hpp:19:
In file included from ./Logistic_Model.hpp:19:
./config.h:23:12: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined]
#   define ARMA_DONT_USE_OPENMP
           ^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h:31:9: note: previous definition is here
#define ARMA_DONT_USE_OPENMP 1
        ^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c PSGD.cpp -o PSGD.o
In file included from PSGD.cpp:17:
In file included from ./PSGD.hpp:19:
In file included from ./PS_Model.hpp:19:
In file included from ./Logistic_Model.hpp:19:
./config.h:23:12: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined]
#   define ARMA_DONT_USE_OPENMP
           ^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h:31:9: note: previous definition is here
#define ARMA_DONT_USE_OPENMP 1
        ^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c PS_Model.cpp -o PS_Model.o
In file included from PS_Model.cpp:16:
In file included from ./PS_Model.hpp:19:
In file included from ./Logistic_Model.hpp:19:
./config.h:23:12: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined]
#   define ARMA_DONT_USE_OPENMP
           ^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h:31:9: note: previous definition is here
#define ARMA_DONT_USE_OPENMP 1
        ^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c Step_Model.cpp -o Step_Model.o
In file included from Step_Model.cpp:16:
./config.h:23:12: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined]
#   define ARMA_DONT_USE_OPENMP
           ^
/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h:31:9: note: previous definition is here
#define ARMA_DONT_USE_OPENMP 1
        ^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o PSGD.so Logistic_Model.o Main_CV_PSGD.o Main_PSGD.o PSGD.o PS_Model.o RcppExports.o Step_Model.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.3/PSGD.Rcheck/00LOCK-PSGD/00new/PSGD/libs
** generating debug symbols (dSYM)
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PSGD)