• using R version 4.3.3 (2024-02-29)
• using platform: aarch64-apple-darwin20 (64-bit)
• R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 12.2.0
• running under: macOS Ventura 13.4
• using session charset: UTF-8
• checking for file ‘PKNCA/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘PKNCA’ version ‘0.11.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘PKNCA’ can be installed ... [6s/6s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [5s/5s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/1s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [20s/21s] OK   Running ‘spelling.R’ [0s/0s]   Running ‘testthat.R’ [20s/20s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [30s/28s] ERROR Errors in running code in vignettes: when running code in ‘v03-selection-of-calculation-intervals.Rmd’   ... > library(ggplot2) > source("../tests/testthat/generate.data.R") Warning in file(filename, "r", encoding = encoding) :   cannot open file '../tests/testthat/generate.data.R': No such file or directory   When sourcing ‘v03-selection-of-calculation-intervals.R’: Error: cannot open the connection Execution halted   ‘v01-introduction-and-usage.Rmd’ using ‘UTF-8’... [1s/1s] OK   ‘v02-example-theophylline.Rmd’ using ‘UTF-8’... [2s/2s] OK   ‘v03-selection-of-calculation-intervals.Rmd’ using ‘UTF-8’... failed   ‘v04-sparse.Rmd’ using ‘UTF-8’... [1s/1s] OK   ‘v05-auc-calculation-with-PKNCA.Rmd’ using ‘UTF-8’... [1s/1s] OK   ‘v06-half-life-calculation-tobit.Rmd’ using ‘UTF-8’... [1s/1s] OK   ‘v06-half-life-calculation.Rmd’ using ‘UTF-8’... [1s/1s] OK   ‘v07-post-processing.Rmd’ using ‘UTF-8’... [1s/1s] OK   ‘v07-unit-conversion.Rmd’ using ‘UTF-8’... [2s/2s] OK   ‘v08-data-imputation.Rmd’ using ‘UTF-8’... [1s/1s] OK   ‘v20-superposition.Rmd’ using ‘UTF-8’... [4s/3s] OK   ‘v21-methods-for-dose-aware-interpolation-and-extrapolation.Rmd’ using ‘UTF-8’... [1s/1s] OK   ‘v22-time-to-steady-state.Rmd’ using ‘UTF-8’... [4s/3s] OK   ‘v23-auc-integration-methods.Rmd’ using ‘UTF-8’... [4s/4s] OK   ‘v30-training-session.Rmd’ using ‘UTF-8’... [5s/5s] OK   ‘v40-options-for-controlling-PKNCA.Rmd’ using ‘UTF-8’... [1s/1s] OK   ‘v60-PKNCA-validation.Rmd’ using ‘UTF-8’... [1s/1s] OK   ‘v80-writing-parameter-functions.Rmd’ using ‘UTF-8’... [1s/1s] OK
• checking re-building of vignette outputs ... [69s/69s] OK
• checking PDF version of manual ... [8s/9s] OK
• DONE Status: 1 ERROR
• using check arguments '--no-clean-on-error '