Check results for 'PFIM'

using R version 4.5.2 Patched (2026-01-31 r89382)
using platform: aarch64-apple-darwin20
R was compiled by Apple clang version 16.0.0 (clang-1600.0.26.6) GNU Fortran (GCC) 14.2.0
running under: macOS Ventura 13.7.8
using session charset: UTF-8
checking for file ‘PFIM/DESCRIPTION’ ... OK
checking extension type ... Package
this is package ‘PFIM’ version ‘8.0’
package encoding: UTF-8
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘PFIM’ can be installed ... [30s/15s] OK See the install log for details.
used C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
used C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
used SDK: ‘MacOSX11.3.1.sdk’
checking C++ specification ... OK
checking installed package size ... INFO installed size is 13.7Mb sub-directories of 1Mb or more: R 2.1Mb doc 1.9Mb libs 6.1Mb vignette-data 2.8Mb
checking package directory ... OK
checking ‘build’ directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking code files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [1s/1s] OK
checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
checking whether the package can be unloaded cleanly ... [1s/1s] OK
checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
checking loading without being on the library search path ... [1s/1s] OK
checking whether startup messages can be suppressed ... [1s/1s] OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [7s/7s] OK
checking Rd files ... [0s/1s] OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking line endings in C/C++/Fortran sources/headers ... OK
checking line endings in Makefiles ... OK
checking compilation flags in Makevars ... OK
checking for GNU extensions in Makefiles ... OK
checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
checking use of PKG_*FLAGS in Makefiles ... OK
checking compiled code ... OK
checking installed files from ‘inst/doc’ ... OK
checking files in ‘vignettes’ ... OK
checking examples ... [1s/1s] OK
checking for unstated dependencies in ‘tests’ ... OK
checking tests ... [44s/44s] ERROR Running ‘testthat.R’ [44s/44s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(PFIM) > > test_check("PFIM") Saving _problems/test-example-pk-mm-130.R [ FAIL 1 | WARN 0 | SKIP 49 | PASS 1075 ] ══ Skipped tests (49) ══════════════════════════════════════════════════════════ • On CRAN (42): 'test-eval-opt-references.R:7:7', 'test-eval-opt-references.R:7:7', 'test-fim-pipeline.R:101:3', 'test-gcsf-poped.R:65:3', 'test-joint-mult-iov.R:2:3', 'test-ode-report.R:5:3', 'test-optimization-accessors.R:4:3', 'test-optimization-accessors.R:11:3', 'test-optimization-accessors.R:23:3', 'test-optimization-accessors.R:34:3', 'test-optimization-accessors.R:51:3', 'test-optimization-accessors.R:89:3', 'test-optimization-accessors.R:109:3', 'test-optimization-accessors.R:126:3', 'test-optimization-algorithms.R:4:3', 'test-optimization-algorithms.R:10:3', 'test-optimization-algorithms.R:16:3', 'test-optimization-algorithms.R:22:3', 'test-optimization-algorithms.R:60:3', 'test-optimization-algorithms.R:79:3', 'test-optimization-algorithms.R:89:3', 'test-optimization-algorithms.R:116:3', 'test-optimization-algorithms.R:133:3', 'test-optimization-algorithms.R:145:3', 'test-optimization-algorithms.R:183:3', 'test-optimization-algorithms.R:207:3', 'test-optimization-algorithms.R:235:3', 'test-optimization-algorithms.R:257:3', 'test-optimization-algorithms.R:275:3', 'test-optimization-algorithms.R:313:3', 'test-optimization-algorithms.R:327:3', 'test-optimization-algorithms.R:375:3', 'test-optimization-algorithms.R:382:3', 'test-optimization-metaheuristic.R:25:3', 'test-optimization-metaheuristic.R:32:3', 'test-optimization-metaheuristic.R:42:3', 'test-optimization-metaheuristic.R:52:3', 'test-optimization-metaheuristic.R:74:3', 'test-optimization-metaheuristic.R:95:3', 'test-reports.R:43:3', 'test-reports.R:121:3', 'test-reports.R:137:3' • R sources unavailable (installed-package check) (2): 'test-pfim-architecture.R:88:3', 'test-pfim-architecture.R:98:3' • package R/ sources not available (2): 'test-code-style.R:3:3', 'test-cran-review.R:299:3' • source Rd unavailable in installed-package check (1): 'test-cran-review.R:426:3' • src/init.c absent (installed tarball) (1): 'test-cpp-kernels.R:27:3' • tests_PFIM/resultats_de_references not found (1): 'test-eval-opt-references.R:45:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-example-pk-mm.R:130:3'): Model PK 1cpt : MichaelisMenten1BolusSingleDose_VmKm ── Expected `detPopulationFim` to equal `valueDetPopulationFim`. Differences: actual != expected but don't know how to show the difference [ FAIL 1 | WARN 0 | SKIP 49 | PASS 1075 ] Error: ! Test failures. Execution halted
checking for unstated dependencies in vignettes ... OK
checking package vignettes ... OK
checking re-building of vignette outputs ... [146s/148s] OK
checking PDF version of manual ... [7s/7s] OK
DONE

Status: 1 ERROR