• using R version 4.4.1 (2024-06-14)
  • using platform: aarch64-apple-darwin20
  • R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 12.2.0
  • running under: macOS Ventura 13.4
  • using session charset: UTF-8
  • checking for file ‘Characterization/DESCRIPTION’ ... OK
  • checking extension type ... Package
  • this is package ‘Characterization’ version ‘2.2.0’
  • package encoding: UTF-8
  • checking package namespace information ... OK
  • checking package dependencies ... OK
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  • checking whether package ‘Characterization’ can be installed ... [2s/3s] OK See the install log for details.
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking ‘build’ directory ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
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  • checking dependencies in R code ... OK
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  • checking for unstated dependencies in examples ... OK
  • checking installed files from ‘inst/doc’ ... OK
  • checking files in ‘vignettes’ ... OK
  • checking examples ... [4s/4s] ERROR Running examples in ‘Characterization-Ex.R’ failed The error most likely occurred in: > ### Name: insertResultsToDatabase > ### Title: Upload the results into a result database > ### Aliases: insertResultsToDatabase > > ### ** Examples > > > # generate results into resultsFolder > conDet <- exampleOmopConnectionDetails() > > tteSet <- createTimeToEventSettings( + targetIds = c(1,2), + outcomeIds = 3 + ) > > cSet <- createCharacterizationSettings( + timeToEventSettings = tteSet + ) > > runCharacterizationAnalyses( + connectionDetails = conDet, + targetDatabaseSchema = 'main', + targetTable = 'cohort', + outcomeDatabaseSchema = 'main', + outcomeTable = 'cohort', + cdmDatabaseSchema = 'main', + characterizationSettings = cSet, + outputDirectory = file.path(tempdir(),'database') + ) Creating directory /Volumes/Temp/tmp/Rtmp06WTd5/database Creating directory /Volumes/Temp/tmp/Rtmp06WTd5/database/execution Creating new cluster Connecting using SQLite driver Uploading #cohort_settings Inserting data took 0.0267 secs Computing time to event results Executing SQL took 0.0165 secs Computing time-to-event for 2 T-O pairs took 0.215 secs exporting to csv file Writing 96 rows to csv Error: vector memory limit of 16.0 Gb reached, see mem.maxVSize() Execution halted
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  • checking tests ... [37s/70s] OK   Running ‘testthat.R’ [37s/69s]
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  • checking re-building of vignette outputs ... [10s/11s] OK
  • checking PDF version of manual ... [4s/4s] OK
  • DONE Status: 1 ERROR
  • using check arguments '--no-clean-on-error '