* installing *source* package 'treestats' ...
** this is package 'treestats' version '1.71.13'
** package 'treestats' successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C++ compiler: 'g++.exe (GCC) 14.3.0'
using C++17
make[1]: Entering directory '/d/temp/2026_09_01_01_50_00_22259/Rtmp4coGnU/R.INSTALL5633c5a09470d/treestats/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.7/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -I. -DARMA_USE_CURRENT -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.7/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -I. -DARMA_USE_CURRENT -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c beta.cpp -o beta.o
In file included from beta.cpp:20:
../inst/include/util.h: In function 'bool is_binary(const std::vector<int, std::allocator<int> >&)':
../inst/include/util.h:121:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
121 | for (size_t i = 1; i < root_no; ++i) {
| ~~^~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.7/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -I. -DARMA_USE_CURRENT -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c brts.cpp -o brts.o
In file included from ../inst/include/branching_times.h:17,
from brts.cpp:21:
../inst/include/util.h: In function 'bool is_binary(const std::vector<int, std::allocator<int> >&)':
../inst/include/util.h:121:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
121 | for (size_t i = 1; i < root_no; ++i) {
| ~~^~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.7/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -I. -DARMA_USE_CURRENT -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c centralities.cpp -o centralities.o
In file included from centralities.cpp:20:
../inst/include/centralities.h: In member function 'void LRSizes::compute(const edge&, const std::vector<double>&, bool)':
../inst/include/centralities.h:35:18: warning: comparison of integer expressions of different signedness: 'const std::array<long long unsigned int, 2>::value_type' {aka 'const long long unsigned int'} and 'int' [-Wsign-compare]
35 | if (i[0] < root_no) root_no = i[0];
../inst/include/centralities.h:36:18: warning: comparison of integer expressions of different signedness: 'const std::array<long long unsigned int, 2>::value_type' {aka 'const long long unsigned int'} and 'int' [-Wsign-compare]
36 | if (i[0] > max_node_no) max_node_no = i[0];
../inst/include/centralities.h: In function 'double diameter(const edge&, const std::vector<double>&, bool)':
../inst/include/centralities.h:281:14: warning: comparison of integer expressions of different signedness: 'const std::array<long long unsigned int, 2>::value_type' {aka 'const long long unsigned int'} and 'int' [-Wsign-compare]
281 | if (i[0] > max_num_nodes) max_num_nodes = i[0];
../inst/include/centralities.h:286:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::array<long long unsigned int, 2> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
286 | for (int i = 0; i < e.size(); i++) {
| ~~^~~~~~~~~~
In file included from centralities.cpp:21:
../inst/include/util.h: In function 'bool is_binary(const std::vector<int, std::allocator<int> >&)':
../inst/include/util.h:121:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
121 | for (size_t i = 1; i < root_no; ++i) {
| ~~^~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.7/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -I. -DARMA_USE_CURRENT -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c colless.cpp -o colless.o
In file included from colless.cpp:21:
../inst/include/util.h: In function 'bool is_binary(const std::vector<int, std::allocator<int> >&)':
../inst/include/util.h:121:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
121 | for (size_t i = 1; i < root_no; ++i) {
| ~~^~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.7/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -I. -DARMA_USE_CURRENT -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c depth.cpp -o depth.o
In file included from depth.cpp:19:
../inst/include/util.h: In function 'bool is_binary(const std::vector<int, std::allocator<int> >&)':
../inst/include/util.h:121:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
121 | for (size_t i = 1; i < root_no; ++i) {
| ~~^~~~~~~~~
In file included from depth.cpp:20:
../inst/include/depth.h: In instantiation of 'double depth::depth_tree<NODE>::calc_b2() [with NODE = depth::node_poly]':
../inst/include/depth.h:440:10: required from here
440 | double calc_b2() override {
| ^~~~~~~
../inst/include/depth.h:445:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
445 | for (size_t i = 0; i < root_no; ++i) {
| ~~^~~~~~~~~
../inst/include/depth.h: In instantiation of 'double depth::depth_tree<NODE>::calc_b2() [with NODE = depth::node_binary]':
../inst/include/depth.h:440:10: required from here
440 | double calc_b2() override {
| ^~~~~~~
../inst/include/depth.h:445:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
445 | for (size_t i = 0; i < root_no; ++i) {
| ~~^~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.7/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -I. -DARMA_USE_CURRENT -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ladder.cpp -o ladder.o
In file included from ladder.cpp:19:
../inst/include/util.h: In function 'bool is_binary(const std::vector<int, std::allocator<int> >&)':
../inst/include/util.h:121:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
121 | for (size_t i = 1; i < root_no; ++i) {
| ~~^~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.7/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -I. -DARMA_USE_CURRENT -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c laplacian.cpp -o laplacian.o
In file included from laplacian.cpp:21:
../inst/include/util.h: In function 'bool is_binary(const std::vector<int, std::allocator<int> >&)':
../inst/include/util.h:121:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
121 | for (size_t i = 1; i < root_no; ++i) {
| ~~^~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.7/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -I. -DARMA_USE_CURRENT -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mpd.cpp -o mpd.o
In file included from mpd.cpp:21:
../inst/include/util.h: In function 'bool is_binary(const std::vector<int, std::allocator<int> >&)':
../inst/include/util.h:121:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
121 | for (size_t i = 1; i < root_no; ++i) {
| ~~^~~~~~~~~
In file included from mpd.cpp:22:
../inst/include/mpd.h: In member function 'std::vector<std::vector<double> > mpd_tree::phylo_path_tree::calculate_inv_path_length()':
../inst/include/mpd.h:173:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
173 | for (size_t i = 1; i < root_no; ++i) {
| ~~^~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.7/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -I. -DARMA_USE_CURRENT -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c phylo.cpp -o phylo.o
In file included from phylo.cpp:21:
../inst/include/util.h: In function 'bool is_binary(const std::vector<int, std::allocator<int> >&)':
../inst/include/util.h:121:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
121 | for (size_t i = 1; i < root_no; ++i) {
| ~~^~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.7/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -I. -DARMA_USE_CURRENT -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rspectra_helpers.cpp -o rspectra_helpers.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.7/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.7/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.7/nloptr/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -I. -DARMA_USE_CURRENT -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sackin.cpp -o sackin.o
In file included from sackin.cpp:20:
../inst/include/util.h: In function 'bool is_binary(const std::vector<int, std::allocator<int> >&)':
../inst/include/util.h:121:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
121 | for (size_t i = 1; i < root_no; ++i) {
| ~~^~~~~~~~~
In file included from sackin.cpp:23:
../inst/include/depth.h: In instantiation of 'double depth::depth_tree<NODE>::calc_b2() [with NODE = depth::node_poly]':
../inst/include/depth.h:440:10: required from here
440 | double calc_b2() override {
| ^~~~~~~
../inst/include/depth.h:445:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
445 | for (size_t i = 0; i < root_no; ++i) {
| ~~^~~~~~~~~
../inst/include/depth.h: In instantiation of 'double depth::depth_tree<NODE>::calc_b2() [with NODE = depth::node_binary]':
../inst/include/depth.h:440:10: required from here
440 | double calc_b2() override {
| ^~~~~~~
../inst/include/depth.h:445:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
445 | for (size_t i = 0; i < root_no; ++i) {
| ~~^~~~~~~~~
g++ -shared -s -static-libgcc -o treestats.dll tmp.def RcppExports.o beta.o brts.o centralities.o colless.o depth.o ladder.o laplacian.o mpd.o phylo.o rspectra_helpers.o sackin.o -fopenmp -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lquadmath -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2026_09_01_01_50_00_22259/Rtmp4coGnU/R.INSTALL5633c5a09470d/treestats/src'
make[1]: Entering directory '/d/temp/2026_09_01_01_50_00_22259/Rtmp4coGnU/R.INSTALL5633c5a09470d/treestats/src'
make[1]: Leaving directory '/d/temp/2026_09_01_01_50_00_22259/Rtmp4coGnU/R.INSTALL5633c5a09470d/treestats/src'
installing to d:/Rcompile/CRANpkg/lib/4.7/00LOCK-treestats/00new/treestats/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'treestats' as treestats_1.71.13.zip
* DONE (treestats)