- using R Under development (unstable) (2024-07-17 r86903 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- using option '--no-vignettes'
- checking for file 'tergm/DESCRIPTION' ... OK
- this is package 'tergm' version '4.2.0'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'tergm' can be installed ... OK
See the install log for details.
- used C compiler: 'gcc.exe (GCC) 13.2.0'
- checking installed package size ... OK
- checking package directory ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [4s] OK
- checking whether the package can be loaded with stated dependencies ... [3s] OK
- checking whether the package can be unloaded cleanly ... [3s] OK
- checking whether the namespace can be loaded with stated dependencies ... [3s] OK
- checking whether the namespace can be unloaded cleanly ... [3s] OK
- checking loading without being on the library search path ... [4s] OK
- checking whether startup messages can be suppressed ... [3s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [15s] OK
- checking Rd files ... [5s] NOTE
checkRd: (-1) NEWS.Rd:427: Lost braces; missing escapes or markup?
427 | \item Changes to \code{simulate.stergm} parameters: addition of \code{duration.dependent} parameter: {Logical: Whether the model terms in formula or model are duration dependent. E.g., if a duration-dependent term is used in estimation/simulation model, the probability of forming or dissolving a tie may dependent on the age the dyad status. If TRUE, the matrix of tie ages will be allocated.}
| ^
checkRd: (-1) discordBDStratTNT-ergmProposal-9267ec8b.Rd:18: Lost braces
18 | code{\link[ergm:blocks-ergmConstraint]{blocks}} constraints and
| ^
checkRd: (-1) discordTNT-ergmProposal-bc75dff0.Rd:9: Lost braces
9 | code{discordance_fraction} of proposed toggles being made on the set of discordant dyads,
| ^
- checking Rd metadata ... OK
- checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
Change-ergmTerm-4236ef3c.Rd: ergm, ergmTerm
Cross-ergmTerm-03ab5578.Rd: ergm, ergmTerm
Diss-ergmTerm-f48278bd.Rd: ergm, ergmTerm
EdgeAges-ergmTerm-dcd27226.Rd: ergmTerm
Form-ergmTerm-fa13d505.Rd: ergm, ergmTerm
NetSeries.Rd: networkDynamic, ergm-terms
Persist-ergmTerm-34b51891.Rd: ergm, ergmTerm
control.simulate.stergm.Rd: ergm_proposal_table, term.options,
simulate.formula
control.simulate.tergm.Rd: ergm_proposal_table, term.options,
simulate.formula
control.stergm.Rd: control.ergm, ergm, san, control.san,
mcmc.diagnostics, term.options, ergm-parallel, ergm-package,
set.MT_terms
control.tergm.Rd: control.ergm, ergm, san, control.san,
mcmc.diagnostics, term.options, ergm-parallel, ergm-package,
set.MT_terms
control.tergm.godfather.Rd: term.options
degrangemeanage-ergmTerm-26c66071.Rd: ergmTerm
degreemeanage-ergmTerm-405409f9.Rd: ergmTerm
discord-ergmHint-3608365e.Rd: ergmHint
discordBDStratTNT-ergmProposal-9267ec8b.Rd: ergmProposal
discordTNT-ergmProposal-bc75dff0.Rd: ergmProposal
edgeages-ergmTerm-07c50367.Rd: ergmTerm
edgecovages-ergmTerm-8222522a.Rd: ergmTerm
edgecovmeanage-ergmTerm-46204f5f.Rd: ergmTerm
edgesageinterval-ergmTerm-3ea18dd0.Rd: ergmTerm
impute.network.list.Rd: network, network.list
is.durational.Rd: ergm_model, ergm_state, ergm
lasttoggle.Rd: network
meanage-ergmTerm-8d81c4e1.Rd: ergmTerm
nodefactormeanage-ergmTerm-11ed6b41.Rd: ergmTerm
nodemixmeanage-ergmTerm-f93ece12.Rd: ergmTerm
simulate.stergm.Rd: network, networkDynamic, ergm, ergmConstraint,
ergmlhs
simulate.tergm.Rd: networkDynamic, ergmConstraint, ergmlhs, network,
net.obs.period, mcmc, mcmc.list, network.list
staticDiscordTNT-ergmProposal-b73a241d.Rd: ergmProposal
stergm.Rd: network.list, ergm, ergmConstraint, ergmlhs
summary_formula.networkDynamic.Rd: networkDynamic, ergm-terms, ergm
tergm-package.Rd: ergm-package, ergmTerm
tergm.Rd: ergmConstraint, ergmlhs, network.list, ergm, coef.ergm,
summary.ergm, mcmc.diagnostics, gof, network, ergmTerm
tergm.godfather.Rd: network, networkDynamic, mcmc
tergm_MCMC_sample.Rd: network, ergm_model, ergm_proposal
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compiled code ... OK
- checking installed files from 'inst/doc' ... OK
- checking files in 'vignettes' ... OK
- checking examples ... [5s] OK
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [167s] OK
Running 'degree.mean.age.R' [8s]
Running 'dynamic_EGMME.R' [1s]
Running 'dynamic_MLE_blockdiag.R' [0s]
Running 'dynamic_MLE_blockdiag.bipartite.R' [0s]
Running 'sim_gf_sum.R' [9s]
Running 'simulate_networkDynamic.R' [7s]
Running 'tergm_offset_tests.R' [0s]
Running 'tergm_parallel.R' [0s]
Running 'testthat.R' [140s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking running R code from vignettes ... SKIPPED
- checking re-building of vignette outputs ... SKIPPED
- checking PDF version of manual ... [26s] OK
- checking HTML version of manual ... [11s] OK
- DONE
Status: 2 NOTEs